| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2514 |
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| Symbol | |
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| ID | 6116798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3070518 |
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| End bp | 3071036 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634031 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001760886 |
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| Protein GI | 170726860 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.908248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACAC CATGTTATAT CTCAATCAAA GGACAGACTC AGGGCGATAT CACTGCGGGC
GCGTTTACTG CTGATTCTGT CGGTGACATT TTTGTCGAAG GCCATGAAGA TGAGATGCTG
GTTCAAGAGT TTGATCATAT CGTGACTGTG CCGACAGACC CTCAATCTGG ACAACCATCT
GGCCAGCGTG TGCACAAACC ATTTAAGTTT ACCGTTGCGC TAAACAAAGC AGTGCCATTG
ATGTACAACT CTTTAGCTTC AGGTGAGAAG ATCACTGAAG TTGAACTCAA GTGGTACCGC
ACTTCAGTTG AAGGTAAGCA GGAGCATTAC TTCAGTACTA AGTTAGAGGG CGCGACGATC
ATCGATATTC AATGTCAGAT GCCGCACTGT CAAGATCCTA ATAAATCTGA TTTTACTCAG
CTGGTTACTG TGTCTATGGC TTACCGTAAA ATCGACTGGG ATCATACCGT TGCTGGTACT
TCTGGTTCTG ATGACTGGCG TAAGCCGATC GAAGCATAA
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| Protein sequence | MPTPCYISIK GQTQGDITAG AFTADSVGDI FVEGHEDEML VQEFDHIVTV PTDPQSGQPS
GQRVHKPFKF TVALNKAVPL MYNSLASGEK ITEVELKWYR TSVEGKQEHY FSTKLEGATI
IDIQCQMPHC QDPNKSDFTQ LVTVSMAYRK IDWDHTVAGT SGSDDWRKPI EA
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