Gene Swoo_2416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2416 
Symbol 
ID6116690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2962085 
End bp2963017 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content44% 
IMG OID641633924 
Productuniversal stress protein UspE 
Protein accessionYP_001760789 
Protein GI170726763 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.268854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000187412 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAGGAAT ATAAAAAGCT GTTAGTTGTT GTCGATCCAA CCAGTGATAC TCAACCAGCT 
CTTGCAAGGG CTGTTGAGCT TGCTACCCGA AATCAAGCTA GCATAACAGT ATTTCTCTCT
ATTTTTGATT TCTCCTATGA GATGACATCC ATCTTATCTG GTCAGGAGCG TGAAGCGATG
CGCCAAGGTG TTATTGCCCA GCGCCAAGCT TGGATCGATG AGGTTGTCGA GCACTACTCC
ACCTCTGAAG TGACAATCGA AAGTGAAGTG ATCTGGCACA ATCGTCCGTT TGAGAGCATT
ATTCAGCATG CCATCTCCAG TGAGTTTGAT CTGATTGTTA AAGGGACACA TGAACACGAC
AAGTTAAAGT CGGTTATCTT TACGCCTACC GATTGGCACT TGATGCGTAA GTCCCCTGTC
CCTGTTTTAC TGGTGAAAGA GCATGACTGG CCAGTTGCGG GTAAGATCTT ATGTGCCATC
AATGTGGGCT CAGAAGATGA AGATCATATC AGCCTAAACA GCAAGATTGT TGAACATGCA
AAAGATCTCG CTAAGAAATT CGACGCTCAG GTTCATCTTG TTAATGGCTA CCCTGGAACA
CCAGTGAATT TAGCCATTGA ACTGCCAGAT TTTGATGCTC ACACTTACAG TGAAACGATA
CGTATGCAGC ATGAGGAGAG AGTTTGCGAA CTTGCCCTCA CCTTAGGAAT AAGTACTGAT
AATTGTCACG TTAAAGAGGG GTTACCTGAA GATGTGATCC CAGATGTGGC TAAAAAGCTC
GATGCTGAGC TAGTTATCTT AGGCACGGTA GGACGAACTG GCTTTTCAGC TGCATTAATC
GGTAATACGG CTGAACATGT TATCGATAGC ATCAATTGCG ACCTTCTTGC CATCAAACCT
GATGGCTATA AATCGCCATT AGATGAGAGC TGA
 
Protein sequence
MKEYKKLLVV VDPTSDTQPA LARAVELATR NQASITVFLS IFDFSYEMTS ILSGQEREAM 
RQGVIAQRQA WIDEVVEHYS TSEVTIESEV IWHNRPFESI IQHAISSEFD LIVKGTHEHD
KLKSVIFTPT DWHLMRKSPV PVLLVKEHDW PVAGKILCAI NVGSEDEDHI SLNSKIVEHA
KDLAKKFDAQ VHLVNGYPGT PVNLAIELPD FDAHTYSETI RMQHEERVCE LALTLGISTD
NCHVKEGLPE DVIPDVAKKL DAELVILGTV GRTGFSAALI GNTAEHVIDS INCDLLAIKP
DGYKSPLDES