Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2416 |
Symbol | |
ID | 6116690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 2962085 |
End bp | 2963017 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641633924 |
Product | universal stress protein UspE |
Protein accession | YP_001760789 |
Protein GI | 170726763 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.268854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000187412 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAGGAAT ATAAAAAGCT GTTAGTTGTT GTCGATCCAA CCAGTGATAC TCAACCAGCT CTTGCAAGGG CTGTTGAGCT TGCTACCCGA AATCAAGCTA GCATAACAGT ATTTCTCTCT ATTTTTGATT TCTCCTATGA GATGACATCC ATCTTATCTG GTCAGGAGCG TGAAGCGATG CGCCAAGGTG TTATTGCCCA GCGCCAAGCT TGGATCGATG AGGTTGTCGA GCACTACTCC ACCTCTGAAG TGACAATCGA AAGTGAAGTG ATCTGGCACA ATCGTCCGTT TGAGAGCATT ATTCAGCATG CCATCTCCAG TGAGTTTGAT CTGATTGTTA AAGGGACACA TGAACACGAC AAGTTAAAGT CGGTTATCTT TACGCCTACC GATTGGCACT TGATGCGTAA GTCCCCTGTC CCTGTTTTAC TGGTGAAAGA GCATGACTGG CCAGTTGCGG GTAAGATCTT ATGTGCCATC AATGTGGGCT CAGAAGATGA AGATCATATC AGCCTAAACA GCAAGATTGT TGAACATGCA AAAGATCTCG CTAAGAAATT CGACGCTCAG GTTCATCTTG TTAATGGCTA CCCTGGAACA CCAGTGAATT TAGCCATTGA ACTGCCAGAT TTTGATGCTC ACACTTACAG TGAAACGATA CGTATGCAGC ATGAGGAGAG AGTTTGCGAA CTTGCCCTCA CCTTAGGAAT AAGTACTGAT AATTGTCACG TTAAAGAGGG GTTACCTGAA GATGTGATCC CAGATGTGGC TAAAAAGCTC GATGCTGAGC TAGTTATCTT AGGCACGGTA GGACGAACTG GCTTTTCAGC TGCATTAATC GGTAATACGG CTGAACATGT TATCGATAGC ATCAATTGCG ACCTTCTTGC CATCAAACCT GATGGCTATA AATCGCCATT AGATGAGAGC TGA
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Protein sequence | MKEYKKLLVV VDPTSDTQPA LARAVELATR NQASITVFLS IFDFSYEMTS ILSGQEREAM RQGVIAQRQA WIDEVVEHYS TSEVTIESEV IWHNRPFESI IQHAISSEFD LIVKGTHEHD KLKSVIFTPT DWHLMRKSPV PVLLVKEHDW PVAGKILCAI NVGSEDEDHI SLNSKIVEHA KDLAKKFDAQ VHLVNGYPGT PVNLAIELPD FDAHTYSETI RMQHEERVCE LALTLGISTD NCHVKEGLPE DVIPDVAKKL DAELVILGTV GRTGFSAALI GNTAEHVIDS INCDLLAIKP DGYKSPLDES
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