Gene Swoo_2315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2315 
Symbol 
ID6116586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2844015 
End bp2844716 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content44% 
IMG OID641633821 
Productorotidine 5'-phosphate decarboxylase 
Protein accessionYP_001760689 
Protein GI170726663 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0273911 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000348094 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTAACA AACCAATTTT AGTCGCCTTA GATTTTGATG ATAAAAACGC TGCTTTGCAA 
TTAGTCGATA AGCTCGATCC AAACATGTGT CGCTTAAAAG TGGGCAAAGA GATGTTTACT
CTTTTTGGGC CACAACTGGT CAAAGACATT CACAGTCGTG GCTTCGATCT CTTTCTTGAT
CTAAAATTTC ATGATATTCC AAACACAGTA GCGAAAGCCG TTTCATCGGC AGCTGAGTTA
GGTGTTTGGA TGACAAATAT TCATGCTAGT GGTGGTCTTG CCATGATGGA AGCGGCTAAA
AAAGCACTCG TTCCATACGG TGACGATGCG CCATTGCTTA TTGCTGTTAC TGTGCTGACT
TCGATGAGTG ATGAGGATCT TAAGCTGATC GGGATTGATG TGCCAGCTTT TGAGCATGTT
CAACGACTTG CTAAATTAAC GCAAAAAGCC GGCCTCGACG GTGTGGTATG TTCAGCACAT
GAAGCTGAGA TATTAAAAGC CTCTTTGGGT GATTCATTTA AGTTAGTCAC ACCGGGTATA
CGTCCAGTTG GCGCAGATAA GGGTGATCAG CACAGAATTA TGACACCGCC TCAAGCGATT
GCAGCAGGCT CTGATTACTT AGTCATTGGG CGACCTATTA CAAAAGCTGC TGATCCACTT
GCAGCGCTAA CGGCAATTCA TCAATCGATT CAAGTGAGTT AA
 
Protein sequence
MSNKPILVAL DFDDKNAALQ LVDKLDPNMC RLKVGKEMFT LFGPQLVKDI HSRGFDLFLD 
LKFHDIPNTV AKAVSSAAEL GVWMTNIHAS GGLAMMEAAK KALVPYGDDA PLLIAVTVLT
SMSDEDLKLI GIDVPAFEHV QRLAKLTQKA GLDGVVCSAH EAEILKASLG DSFKLVTPGI
RPVGADKGDQ HRIMTPPQAI AAGSDYLVIG RPITKAADPL AALTAIHQSI QVS