| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2299 |
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| Symbol | |
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| ID | 6116570 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2821812 |
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| End bp | 2823653 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641633805 |
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| Product | signal peptide peptidase SppA, 67K type |
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| Protein accession | YP_001760673 |
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| Protein GI | 170726647 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000354581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.336297 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATA AACCCTCATT AATAAAAAGA ATATTTGTTC TTTTATGGAA GACAATTAAC
GGTACACGGA AACTGATTTT AAATGTGATC TTTTTCGGTT TCCTGTTGGC GCTGATTGTT
GCTATGAATA TAGATGATAG TGTGAATATT GAAACTGGGT CAGCATTAGT ACTCAACCTT
TCAGGTTCTA TTGTTGAGCA AAAAAGACAA GTAGACCCAT TTGAAGAGGC GATGAAAAGC
GGCAAAAACA ACGACGGCCA AGGCGAGATA TTACTTGCCG ATGTGCTTAA TGTGATCGAC
AACGCCGCTC ATGACACTCG CATCTCTTCC ATCGTGTTAG ATATGGGGCA TTTAAGATGG
ACAGGAATAA GCAAGCTGCA ATCTATTGGC GATGCCTTAA TCCAGTTTAA AGAATCGGGC
AAACCTGTTA TTGCACAAGC TAATAGCTAT GGCCAAAATC AATATTTTCT CGCCAGCTTT
GCCGATACCA TCTACCTCAA CCCACAGGGC GGTGTTGAAC TAGAGGGCTT GAGCCGTTAT
CGCCAGTATT ATAAGTCAGC ACTTGAGAAG CTTAAAGTGA AGGCGCACAT CTTCCGAGTC
GGTACCTTTA AATCGGCTGT TGAACCCTAC ATTCGTGATG ATATGTCTCC CGCAGCAAAA
GAAGCCAACC TTGCGCTGTT GAATGATATC TGGAGCAGTT ATCAAGGCGT TGTTGCCGAT
AATCGTAATA TTGCAGGTGA CGACCTTGTA CTCAACTCTG AACGCTACCT CGCAGAGCTT
GATAAAGCTG AAGGTCAGTC TGCTGAAATG GCACTGAATA TGAACTGGGT CGATGAACTC
GCAACGTCAG AAAGCTTCAG GCTTAAGATG TTAGACTTGG TTGGACAGGC AAGAGATGGC
GATAATTTCA AACAGATAGG CTTTCATGAC TACTTAAGTC TCACCGCTAA GCACCCTCTT
CTTTATACCA ATGATACTGT CGGTATCATT GTTGCCAAAG GTACCATACT CAACGGCAAC
CAGCCTGCTG GTAATATTGG CGGTGAAAGT ACCTCAGAAC TCCTTAGAAA GGCGCGCTTT
GATGATCAAG TAAAAGCCGT TGTGTTACGA GTCGATAGTC CAGGCGGAAG CGCCTTTGCT
TCCGAGCAGA TCCGTCAAGA GGTACTTGCA CTGAAAACTG CAGGCAAACC CGTTGTCGTC
AGTATGGGCA GTTACGCAGC GTCGGGTGGA TATTGGATCT CAGCCAGCGC AGATTACATC
TACGCCACAC CAACAACACT CACAGGTTCA ATCGGCATCT TTGGTATGAT CACCACTTTT
GAAGATTCGC TATCAAGTAT AGGGATCCAC ACTGACGGTG TAGCAACCTC TGAATGGGCT
GGCATCTCAG TGGCGAAAGG ATTAACCCCA GGTATCAAAG ATGTGATCCA ACGTCACGTT
GAGCGTGGTT ATCATGATTT TATCTCTCTT GTGGCCAACG AGCGTGATAT GAGCTTAGAT
GATGTGGATA GCATAGCTCA AGGTCGTGTC TGGTCAGGAA GAAAGGCACT TAGCCTTGGC
TTAGTTGATG AGTTAGGCGA TCTAAAACAA GCCGTCGCTA AAGCTGCTCA GATGGCAGAA
CTCGATGACT TTGACAGTGA AATAATTGAG CAAGATCTCA CGCCTCAAGA GCAGTTTATT
CAAGAGATGT TCGCTTCAGC GTCAGCCTAT TTGCCTGAAT CTATGAGTCA TAGTTCTGTG
ATTGAGCAGC TACTGTCTCA ATGGTCTAGC GCCATTGATG AATTTAGATC CTTTGATGAT
CCTAAAGGCA TGTATCTGTA CTGCGATACC TGTAACTTCT AG
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| Protein sequence | MSDKPSLIKR IFVLLWKTIN GTRKLILNVI FFGFLLALIV AMNIDDSVNI ETGSALVLNL
SGSIVEQKRQ VDPFEEAMKS GKNNDGQGEI LLADVLNVID NAAHDTRISS IVLDMGHLRW
TGISKLQSIG DALIQFKESG KPVIAQANSY GQNQYFLASF ADTIYLNPQG GVELEGLSRY
RQYYKSALEK LKVKAHIFRV GTFKSAVEPY IRDDMSPAAK EANLALLNDI WSSYQGVVAD
NRNIAGDDLV LNSERYLAEL DKAEGQSAEM ALNMNWVDEL ATSESFRLKM LDLVGQARDG
DNFKQIGFHD YLSLTAKHPL LYTNDTVGII VAKGTILNGN QPAGNIGGES TSELLRKARF
DDQVKAVVLR VDSPGGSAFA SEQIRQEVLA LKTAGKPVVV SMGSYAASGG YWISASADYI
YATPTTLTGS IGIFGMITTF EDSLSSIGIH TDGVATSEWA GISVAKGLTP GIKDVIQRHV
ERGYHDFISL VANERDMSLD DVDSIAQGRV WSGRKALSLG LVDELGDLKQ AVAKAAQMAE
LDDFDSEIIE QDLTPQEQFI QEMFASASAY LPESMSHSSV IEQLLSQWSS AIDEFRSFDD
PKGMYLYCDT CNF
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