Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2292 |
Symbol | |
ID | 6116563 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2813880 |
End bp | 2815817 |
Gene Length | 1938 bp |
Protein Length | 645 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641633798 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_001760666 |
Protein GI | 170726640 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00114874 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.690041 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAGT TATTGCAATC CCATTTCGGT TTCAGTGAGT TTAGACCCGG TCAAGAACAG GTCGTTCGTG CCATACTCGA TGGCCATAGC GCTGCCGCTA TATTTCCAAC GGGTTCGGGT AAATCACTCT GCTATCAACT GCCCGCCCTG TGTTTACCTC ATTTGACCAT CGTTGTGTCG CCACTGCTTG CCTTGATACA AGATCAGATA AGCTTTCTCA ATAGCAAAGG TATCGCTGCA GCGAGTATCG ATTCGACCCA AAGTCGAGAG GAAACCAATG AGGTGATGGC AGGTGTTAGA GCTGGTGTGA TAAAGATCTT AATGATCTCT GTTGAGCGGC TCAATAACGA ACGCTTTAGA CAGTTTATTG CCGGAGTACC CATTTCGCTA TTAGTGGTCG ATGAAGCCCA CTGTATCTCT GAGTGGGGAC ATAACTTTCG TCCAGATTAC CTAAAGTTGC CCAGTTATCA GCAAGCATTG AACATCCCGC AAACCTTACT GTTAACAGCC ACGGCAACCT CCAAAGTCAT AGAGGATATG GGAAGTAAGT TTGGCATTAA ACCTGAGCAT ATCACCTTAA CGGGTTTCTA CCGACCTAAC TTACACTTAG GAGTTAAAGG ACTGAGCAGT ACAGATAAAC TTGATTATCT CTCCACTTGG TTACAAACAC GGCAGTTAAG CTCTGGGATC ATCTATGTCA CGCTGCAGCA GACTGCCGAG AAGGTTGCTG AGCAACTAAA AGCAAGAGGT ATATCGGCAA AAGCCTATCA TGCAGGCATG ACATCTGAGG TGCGTCATGC TATTCAGCAT CAGTTTATGT CAGGAGAGCA GGGCATTATT GTCGCTACAA TCGCCTTTGG TATGGGGATA GATAAAAGCG ATATTCGTTT TGTGGTGCAT TATGATCTGC CAAAATCTAT TGAAAACTAC GCACAGGAGA TTGGTAGGGC TGGGCGTGAC GGTGGAGACT CTGAGTGTTT GGTGCTGGCC AACGGGGATA ATCTCAGTAC ATTAGAGAAC TTTGTCTATG GAGACACCCC AGAACCGTCA GGGATTGGGA TAGTCCTTAA TGAGATAAAA AAAGCTGCTT TTGAGCATAG GAGCTCGCAA TTACCTCAAT GGGAGCTGGT GTTAAATAGT CTCTCTAATC AATCCAATAT TCGCCCGTTA TCCCTTAAAA CCTTGCTGGT GTATCTGGAG CTTCTTAATG TCATCAAGCC TACCTATAGC TACTTTGCCG AGTATAAATT TAAGTTTCTT CTTCCTGAAG CAGAAGTGAT TGAGTATTTT ACCGCTGAGA GACGAGACTT TATTCGCGCT ATTTTTACCA CTGCGGACAG GGCAAAAATT TGGTCGAGTG TGAACTTTGA TTCACTGAAT CAAACTTATG CCAGCGACAG ACAAAGAGTT TTAAAAGCGA TCAATTACCT TGATGAAAAA GGGATGATTG AGTTGCAATC AAAGCAGATG ACTCAGGTTT ATCAGATTGT TAATAGTGAG TTTGAACTCA AGGAGCTAAC TGCGAAATTA TCTAAGCGCT TTTTAAACAA AGAAGCCAGT GAAGTGGCGA GGATCAATCA TCTGGTTGAG CTGTTTACTT CGCCAAACTG CTTGAGTCGC CAACTTGCTC ATTATTTTTC AGATGATCAA ATGACACAAG ATTGTGGTGT CTGCACCGCT TGTCGTGGCG AGCGGGCAAT ACTTCCTCCA CCTCCTTACT TAACACCGCT TGAAGAGCAT GACTTTAACC AAGTTTGCGC TGATGTTGTC GCTAAGCTTG GTACTGCATG TACACCTGTT TTGGTGGCAC GCTTCCTTTG TGGGCTCACT ACCCCCTTGT TTACCAAGTT AAAGCTTAGA TCTGCTAAAG GCTATGCTCA GTTTGAGCGA TACCGATTTT CTGATGTAAA GCTATGGGTA ACCCAAGGGC TAAAATAG
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Protein sequence | MQQLLQSHFG FSEFRPGQEQ VVRAILDGHS AAAIFPTGSG KSLCYQLPAL CLPHLTIVVS PLLALIQDQI SFLNSKGIAA ASIDSTQSRE ETNEVMAGVR AGVIKILMIS VERLNNERFR QFIAGVPISL LVVDEAHCIS EWGHNFRPDY LKLPSYQQAL NIPQTLLLTA TATSKVIEDM GSKFGIKPEH ITLTGFYRPN LHLGVKGLSS TDKLDYLSTW LQTRQLSSGI IYVTLQQTAE KVAEQLKARG ISAKAYHAGM TSEVRHAIQH QFMSGEQGII VATIAFGMGI DKSDIRFVVH YDLPKSIENY AQEIGRAGRD GGDSECLVLA NGDNLSTLEN FVYGDTPEPS GIGIVLNEIK KAAFEHRSSQ LPQWELVLNS LSNQSNIRPL SLKTLLVYLE LLNVIKPTYS YFAEYKFKFL LPEAEVIEYF TAERRDFIRA IFTTADRAKI WSSVNFDSLN QTYASDRQRV LKAINYLDEK GMIELQSKQM TQVYQIVNSE FELKELTAKL SKRFLNKEAS EVARINHLVE LFTSPNCLSR QLAHYFSDDQ MTQDCGVCTA CRGERAILPP PPYLTPLEEH DFNQVCADVV AKLGTACTPV LVARFLCGLT TPLFTKLKLR SAKGYAQFER YRFSDVKLWV TQGLK
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