| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2289 |
|---|
| Symbol | |
|---|
| ID | 6116559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2808810 |
|---|
| End bp | 2809766 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641633794 |
|---|
| Product | transposase IS111A/IS1328/IS1533 |
|---|
| Protein accession | YP_001760663 |
|---|
| Protein GI | 170726637 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3547] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.795414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.791577 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA AAACTAATCA AAACATTAGC GTAGGTGTCG ATACTGGCAA GTTTCAGCTC
GACATTTATA TTCGGCCACT CGATATCTTT TTCACCGTTA AAAACGATGA GAAAGGGATT
AAGGATGCGG TAAACAGCAT TAAACAATAC ACACCAAAAC GTATTGTTAT TGAAGCGACA
GGTCGCCTAG AAATGCCATT TATCATGGCC TGTGCTGAAG CCAATCTACC CTTCGTTATC
GCCAACCCTA TACACATAAA ACGTTTTGCT GGCGCGATTG GTCAACGCGC AAAAACAGAC
AAATTAGACG CTAAACTTAT CGCTCATTAT GGTGAAGCAA TTAAACCTAA GCTATCTACT
TTAAAGCCCA GCATCATGCA GGCTATGAGC GATTTGGTTT CAAGGCGTAA CCAAATTTTG
GCAATGCAAA CTATGGAGAA AAACCGCCTT CAAATTCTGC CTAAAGACCT AGCAATGACA
ATAAAACCTA TCTTAACAGC CTTTAAAAAT CAGATAGAAA AGATTGAAGC TAAAATCATT
AAACTCATCG AGTCATGCCC TGACTATCAA GCCAAAAACA TCATTCTACA AAGCATGAAA
GGGATAGGTA AAATAGCCGC AGCTTCTATT ATTAGTAATC TCCCTGAACT CGGATATATC
AATAACAAAG AAGCAAGTTC ACTGGTTGGT GTTGCACCAA TGAATAAGGA AAGTGGCCGT
TTCAAAGGCC AAAGAAAAAT TCAAGGAGGA AGGCATCAAG TCAGAACAGT TTTATACATG
GCTATGATGT CTGCAATTCA GTCTAACCCA GTTTTCAAAC AAACTTATCA GCGATTAGTC
GCTGCTGGAA AACCGAAAAA AGTGGCGATA ATTGCCTGTA TCAGGAAGAT GGTTGTAACG
TTAAACTCGA TGCTAAGAGA TGGTGTTATG TGGGAAGCGC CAAAAGCTCA AATTTAG
|
|---|
| Protein sequence | MNSKTNQNIS VGVDTGKFQL DIYIRPLDIF FTVKNDEKGI KDAVNSIKQY TPKRIVIEAT
GRLEMPFIMA CAEANLPFVI ANPIHIKRFA GAIGQRAKTD KLDAKLIAHY GEAIKPKLST
LKPSIMQAMS DLVSRRNQIL AMQTMEKNRL QILPKDLAMT IKPILTAFKN QIEKIEAKII
KLIESCPDYQ AKNIILQSMK GIGKIAAASI ISNLPELGYI NNKEASSLVG VAPMNKESGR
FKGQRKIQGG RHQVRTVLYM AMMSAIQSNP VFKQTYQRLV AAGKPKKVAI IACIRKMVVT
LNSMLRDGVM WEAPKAQI
|
|---|
| |