| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2232 |
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| Symbol | |
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| ID | 6116502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2738654 |
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| End bp | 2739328 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641633739 |
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| Product | nucleotidase |
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| Protein accession | YP_001760608 |
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| Protein GI | 170726582 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.632327 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00198907 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAATACC AATGGATTCT ATTCGATGCC GATGAAACCC TGTTTCATTT CGATGCATTT
GCGGGCCTTA AACTGATGTT TAGCGGTTTC GATATCGATT TTACATTAAC TGATTTTGAG
ATCTATCAAA GGGTGAATAA ACCACTTTGG GTGGATTATC AAGATGGGGT GATTAGCGCA
GCCGAGCTAC AGACAAAAAG GTTTATTGAG TGGGGGGAGA AGATAGGCGT GACGGCTCAA
CACCTCAATA GTGAATTTCT AAAGGCGATG GCGGAGATAT GCGATCTGCT ACCTGGGGCA
AAAACCTTGA TTGAGGATTT AGCCGGTAAA GCGAGCCTAG GCATTATCAC TAATGGTTTT
ACTGAGTTGC AAACAGTACG TTTAGAGAAA ACAGGCCTGC TGAACGCATT TCATCACGTC
ATTATTTCTG AAGAGGTGGG AATTGCGAAA CCAGATGTTG GTATCTTCGA TCATGCGCTA
ACACGGATGA ATAATCCGGA GCGAAGCCAA GTATTAATGG TTGGGGATAA CCCGCATTCA
GACATTTTAG GTGGCTTGAA TGCTGGGTTA GATACTTGCT GGCTCAATGC AACAGAGCAG
GAGAGGCCAG ATGGGATCAC GCCCCACTAT GAAGTTAAAT CTTTGACAGA GCTGCATAGG
TTACTATTAA GTTAA
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| Protein sequence | MQYQWILFDA DETLFHFDAF AGLKLMFSGF DIDFTLTDFE IYQRVNKPLW VDYQDGVISA
AELQTKRFIE WGEKIGVTAQ HLNSEFLKAM AEICDLLPGA KTLIEDLAGK ASLGIITNGF
TELQTVRLEK TGLLNAFHHV IISEEVGIAK PDVGIFDHAL TRMNNPERSQ VLMVGDNPHS
DILGGLNAGL DTCWLNATEQ ERPDGITPHY EVKSLTELHR LLLS
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