| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2227 |
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| Symbol | |
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| ID | 6116497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2732235 |
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| End bp | 2733749 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641633734 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_001760603 |
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| Protein GI | 170726577 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00238187 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00748664 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAGTAAAG AAGTCATCAT TAAGCAAGCC GATCTTATTG AGAGCGTTGC CGATTCCCTA
CAATATATCT CATATTACCA CCCCAAAGAT TTCGTTGATG CTATGTCTGA GGCCTATGAG
CGTGAAGAGA GCGCAGCGGC CAAAGATGCA ATTGCACAGA TCCTGATCAA CTCACGTATG
TCGGCCGAAG GCAAACGTCC TTTATGCCAA GATACGGGGA TTGTGACCTG TTTTGTAAAA
GTAGGAATGG GCGTTAAGTG GGACAAGACG GACATGACCG TTCAACAGAT GGTCGATGAG
GGCGTCAGAC AAGCTTACAA TAATCCAGAT AACCCACTTC GTGCATCCAT TGTTGCCGAT
CCAGCTGGCA GCCGCAAAAA CACCAAAGAC AATACGCCAT CAGTTGTCCA TATCGATATG
GTACCTGGCG ATCATGTTGA AGTAGCCATT GCGGCTAAAG GTGGCGGTTC TGAAAATAAA
TCTAAGATGG CAATGTTAAA TCCATCGGAT GATGTGGCTG CTTGGGTTGA GAAAACATTA
CCCACCATGG GTGCTGGCTG GTGCCCACCG GGAATGCTAG GCATTGGCAT TGGCGGTACC
GCTGAAAAAG CCGCTGTGAT GGCAAAAGAG TCACTAATGG ATCCTGTTGA TATCCATGAG
CTTCAAGCTA GAGGCGCAGA AACCACAGAA GAGAAGATGC GTTTAGATAT CTTTGAGCGC
TCTAATAAAC TTGGTATTGG AGCGCAGGGC TTGGGTGGAT TAACCACTGT GCTCGATATT
AAAATTAAAA CGGCGCCAAC TCATGCGGCA TCTAAGCCTG TGGTGATGAT CCCAAACTGT
GCTGCTACGC GTCATGTACA TTTTCATCTT GATGGCAGCG GCCCTGCTGT ACTGACTCCG
CCATCACTGG AAGATTGGCC TGTGATCACC CGTGAAGCGG GAGAAAACAC GCGCCGTGTT
GATCTAAACA CTGTCACTCA AGCTGAGATA GAGCAGTGGA AGAGCGGTGA TACGTTGCTG
TTAAATGGCA AGATGCTCAC GGGTCGAGAT GCGGCGCATA AGCGTATTCA AAGCCTGATT
GAGTCAGGTG AAGGTTTGCC AGAGGGGGTC GACTTTAAAG GTAAATTTAT CTATTACGTT
GGTCCTGTTG ATCCTGTTGG CAGTGAAGTT GTAGGACCTG CTGGCCCAAC AACGGCGACT
CGTATGGATA AGTTTACCGA TCTGATGCTA GAGAAGACTG GATTGATGGG CATGATAGGT
AAAGCTGAGC GTGGGCCTGC TACTGTCGCT TCTATTAAGA AAAATAAAGC TGTTTACCTG
ATGGCTGTCG GTGGCGCTGC TTATTTAGTG TCGAAAGCGA TTAAAACCTC TCGTGTTGTC
GCTTTTGCCG ATCTAGGCAT GGAAGCTATC TATGAGTTTG ATGTGAAGGA TATGCCTGTC
ACTGTTGCAG TTGATTCAGA TGGCGTGAAT GCCCATGAGA CGGGCCCAGC TATCTGGAAA
ATTAAACTGA ACTAG
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| Protein sequence | MSKEVIIKQA DLIESVADSL QYISYYHPKD FVDAMSEAYE REESAAAKDA IAQILINSRM
SAEGKRPLCQ DTGIVTCFVK VGMGVKWDKT DMTVQQMVDE GVRQAYNNPD NPLRASIVAD
PAGSRKNTKD NTPSVVHIDM VPGDHVEVAI AAKGGGSENK SKMAMLNPSD DVAAWVEKTL
PTMGAGWCPP GMLGIGIGGT AEKAAVMAKE SLMDPVDIHE LQARGAETTE EKMRLDIFER
SNKLGIGAQG LGGLTTVLDI KIKTAPTHAA SKPVVMIPNC AATRHVHFHL DGSGPAVLTP
PSLEDWPVIT REAGENTRRV DLNTVTQAEI EQWKSGDTLL LNGKMLTGRD AAHKRIQSLI
ESGEGLPEGV DFKGKFIYYV GPVDPVGSEV VGPAGPTTAT RMDKFTDLML EKTGLMGMIG
KAERGPATVA SIKKNKAVYL MAVGGAAYLV SKAIKTSRVV AFADLGMEAI YEFDVKDMPV
TVAVDSDGVN AHETGPAIWK IKLN
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