| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2188 |
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| Symbol | |
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| ID | 6116458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2681939 |
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| End bp | 2683069 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641633696 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001760565 |
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| Protein GI | 170726539 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0116098 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAG AAGTCTTAAC CTTAGCTCAG GATCTTATCT CTCGCCCCTC TGTCACTCCT
CTTGATGAAG GGTGTCAGAC ACTCATGGCT GAAAGGTTAG CAGCCCAAGG CTTTGAGATA
GAATCTATGG TATTTGAAGA TACCACCAAT ATGTGGGCAC GCCGAGGCAA AGAGGGACCA
CTTTTTTGTT TTGCAGGGCA CACAGATGTC GTTCCAGTCG GAGACCTTAA TCGTTGGCAC
ACGCCCCCCT TTGACCCGGT AGTCATCGAT GGTTACCTTC ATGGTCGCGG CGCAGCTGAC
ATGAAAGGTT CACTTGCCGC CATGGTGGTT GCCACTGAGC GCTTTGTAGA GAAACACCCC
GATCATAATG GTTCTATCGC TTTTCTCATC ACCAGTGATG AAGAGGGTCC ATTCATTAAC
GGGACAACCC GTGTTATCGA TACCTTAGAA GCACGCAATG AGAAAATAAC TTGGTCTCTT
GTCGGTGAAC CATCTTCGAC CCATAAGTTG GGTGATATCG TTAAAAATGG TCGACGAGGC
AGCTTAACTG GAAATCTAAC CATCAATGGT ATTCAAGGAC ATGTTGCCTA CCCTCACCTT
GCGGATAATC CAATCCACAA AGCGGCGCCC GCTTTGGATG AACTGGCACG GATGAAATGG
GATAATGGTA ATGAGTTTTT CCCACCGACC AGTTTTCAAA TTGCCAATAT AAATGGCGGT
ACCGGTGCAT CGAATGTGAT CCCTGGTGCC CTTGAGGTGA TGTTTAATTT TCGTTACTCC
ACTGAGGTAA CCGCAGAGAT CTTAATCCAG CGAGTGCTTA ATATCTTAGA TGCGCACGGA
TTAGATTACG ATATCAGCTG GATTTTTAAC GGCCTGCCAT TTTTAACTGG TGACGGCCCA
CTACTGGATG CAACCCGCGA AGCGATTAAA CAGGTTACAG GCTCCGATAC AGATCCCCAG
ACCTCAGGTG GCACATCTGA TGGACGCTTT ATTGCGCCAA CTGGTGCCCA TGTGATTGAG
CTAGGTCCAG TCAACGCGAC CATACATAAG GTCAACGAAT GCGTTAAGGT TTCAGATCTT
GAACTGCTAA CCCAATGTTA TGAAGTGATC CTGGAAAAGC TACTTTGCTA A
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| Protein sequence | MSQEVLTLAQ DLISRPSVTP LDEGCQTLMA ERLAAQGFEI ESMVFEDTTN MWARRGKEGP
LFCFAGHTDV VPVGDLNRWH TPPFDPVVID GYLHGRGAAD MKGSLAAMVV ATERFVEKHP
DHNGSIAFLI TSDEEGPFIN GTTRVIDTLE ARNEKITWSL VGEPSSTHKL GDIVKNGRRG
SLTGNLTING IQGHVAYPHL ADNPIHKAAP ALDELARMKW DNGNEFFPPT SFQIANINGG
TGASNVIPGA LEVMFNFRYS TEVTAEILIQ RVLNILDAHG LDYDISWIFN GLPFLTGDGP
LLDATREAIK QVTGSDTDPQ TSGGTSDGRF IAPTGAHVIE LGPVNATIHK VNECVKVSDL
ELLTQCYEVI LEKLLC
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