Gene Swoo_2178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2178 
Symbol 
ID6116448 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2670346 
End bp2671461 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content42% 
IMG OID641633686 
ProductNlpB/DapX family lipoprotein 
Protein accessionYP_001760555 
Protein GI170726529 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3317] Uncharacterized lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000219579 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.501785 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAAGC AAGTGACTCC TTTAGTCTTG ATCGCTGCAG TTACCGCTTG TAGCTCACCA 
GTGGATCGAA GACAAGCCAA TGATGGCGAC GAATACATTA ATGCTGTTGT TGAGCCTGCG
CTTATTATTC CAGATGGATT AAACACTCCT GTGTACAGTA AGGAGTATGA GATCCCCTCC
ATCGGCAGCA AAAGTGATGT GAAATTAGTC GGTAAGATGT TGGATATTCG TCCTCCATTG
CAAGTATTAC CTATGGCTGA AGGAACACAT GTTGAAGAGG GCAGTGACAA TATTAAGATT
GTTGTTGAGT CTATTGATAA CGATATCGAC CTTAAAAAAG AGCTGTATGA CGTTTTGCAG
TCTTATTTAG CGAGTCGCTC TATTGCTGTG TTAAGTGAAG ATTACGATAA TGGCTTGATA
GAGACCGATT GGCTGGAAAG CAAAGAGGTG ATCGACTCTA ACCTGTGGGG GAGTGATGAA
GTTTACTTGC TTCGTCAACG TTATCAATTT CATGTCGATG TTCGTCCCCA TGGCCGCAGT
GGTAATATCT CCATCGATCT AATTGATCAT GAAGAGAGCT TTGATGGTGA GCAGCAAGAT
ATCGTGTTAA GTGGTGAAGA TAAGCGTCGT TACACCATAG ACATGCTCAA TAATGCCGTT
GCTTACATGA GTGTTAAACG TGCTCAATCT ATTAAAGCTA AGCGCATTAA AGAGAGTTTA
GGTATTGATG TTGCTGTGGT TAAAGGTTCT GAGCCTGATG TTGAAGCTGA AGAGTTTGTT
CAATCATATT GGCTTGCCGA TGCACCGTTT AAGCGAACCT GGGAACGTCT TCGTATCGTT
TTGCCTGAAC TAGGCTTTGA AATTATTGAT ATGGATATTG GTAAAGGTCT TTACTACGTC
AATGTCAATG ATGACTCTGG TTTCTGGAGT TCTCTGTGGA ATGAGAAAGA TCTGCCTATT
GATGAGGGAT CTTATCGTCT AATTCTCAAA GAGAGCGGTG AGAGCACCGA ACTTTATCTG
CACAGTGCAG ATGATCAACC TCTAGATAAT GCGGTTGTTG AAGCTGTGTA TGAAGGTTTA
GCTGAGTTGA TGAGAGAGGA CCGTAAGGTT CGATAA
 
Protein sequence
MLKQVTPLVL IAAVTACSSP VDRRQANDGD EYINAVVEPA LIIPDGLNTP VYSKEYEIPS 
IGSKSDVKLV GKMLDIRPPL QVLPMAEGTH VEEGSDNIKI VVESIDNDID LKKELYDVLQ
SYLASRSIAV LSEDYDNGLI ETDWLESKEV IDSNLWGSDE VYLLRQRYQF HVDVRPHGRS
GNISIDLIDH EESFDGEQQD IVLSGEDKRR YTIDMLNNAV AYMSVKRAQS IKAKRIKESL
GIDVAVVKGS EPDVEAEEFV QSYWLADAPF KRTWERLRIV LPELGFEIID MDIGKGLYYV
NVNDDSGFWS SLWNEKDLPI DEGSYRLILK ESGESTELYL HSADDQPLDN AVVEAVYEGL
AELMREDRKV R