Gene Swoo_2133 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2133 
Symbol 
ID6116396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2609419 
End bp2611491 
Gene Length2073 bp 
Protein Length690 aa 
Translation table11 
GC content44% 
IMG OID641633636 
Productcarboxy-terminal protease 
Protein accessionYP_001760512 
Protein GI170726486 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0793] Periplasmic protease 
TIGRFAM ID[TIGR00225] C-terminal peptidase (prc) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.55516e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0766103 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAAAA TACCCTTGGT TGTTTCAATC GCCAGTATTT TTGTAGGATT CTCGGCGTGG 
GCGTTAACCC CATCAATTCC ATTCAGCGAG TTACCCGCTT TAACACAGGA GCCGCAACAT
AAAGTTGCAA GCAAACGTGT TACAGGTCTC TTCACTCGTT CCCATTACCA TAGATTCGAT
CTTGACGACA CTTTCTCTGA GCAGGTGTTT AAACGTTACC TTAAGCAGTT AGATTATCGC
CGTAACGTGA TGCTGCAGAG TGATCTCGAT AGTTTTGGCT TATATTCAAA GCAGTTCGAT
GACATGTTAA AGAGTGGAGA TCTGACCCCT GCCTATAAGA TGTTTGATCT GGTGCAGAAG
CGTCGCTATG AGCGTTTTGC TTACGCCTTG TCTCTTCTCG ATAAAGAGAT CGATTTTACC
GTCCCTAATG ATAAATATCA GTATGATCGC GAAGATGCCG CATGGCCGAA AGATGAAGCT
GAGATTAATG AGTTATGGCG TCAGCGTGTT AAATATGACG CGTTGAACCT GAAACTGACG
GGTAAAACAT GGGAAGAGAT CGTTCCTGTC CTTGAGAAGC GCTATAACAA TGCTATCAAG
CGACTGAGCC AGACAAAAAG TGAAGATGTT TTCCAAGGTG TGATGAATGC TTTTTCTCGC
ACGGTAGAAC CTCACACAAG TTACCTTTCT CCACGTAATG CTGAACGTTT CCAGATGGAG
ATGAACCTAA GCCTTGAAGG CATAGGTGCT GTGTTACAGA TGGATGATGA CTATACAGTG
ATCAAAAGCC TTGTTGCCGG CGGACCTGCT GCAACTAGTG AGAAGCTTTC TCCTGAAGAT
AAAATTGTTG GTGTTGGTCA AGATGGCAAA GAGATTGTCG ATGTCATTGG CTGGCGTCTT
GATGATGTAG TTGAATTGAT TAAAGGGCCT AAAGGCAGCA AAGTTGTGCT GCAAATTCTA
CCTAAGAAGG GCGGTTCTTC AGCTAAGCCA TTTGAAGTCG TTATCGTCAG AGACAAAATC
AGATTAGAAG ATCGCGCCGC AACATCTGAG GTGATTGAGC CTGAAGAGGG CATGTACGCT
AATCGTAAGG TCGGTGTTAT TCAGATCCCG GGTTTCTACA TGGATCTCTC TAAAGATGTT
TCTAAAGAGC TTGTTAAGCT AAAAGAAGCG CAAGTTGAAG GTATTATCAT TGACCTGAGA
GGTAACGGTG GTGGTGCGTT AACTGAAGCA ACCCTATTAA CTGGGCTGTT TATTGAGCAG
GGACCTGTGG TTCAAATCAG AGATGCCAAC GGCAAAGTGT CTCAGAATCG TGATAATGAC
GGCAAAGTCA CCTACTCAGG TCCATTGAGC GTGATGGTTG ACCGCTATAG CGCGTCGGCA
TCAGAAATTT TTGCTGCAGC ACTTCAGGAT TATGATAGAG CCTTGATTGT CGGTGAATCT
ACATTTGGTA AAGGCACGGT GCAGCAGCAC AAGAGTCTTG GTCGAATTTA TGATATGTAT
GAAAAGCCGA TTGGCCATGT TCAGTACACG ATCGCGAAAT TTTACCGAAT CAATGGTGGC
AGCACTCAGC TTAAAGGTGT GACTCCTGAT ATCTCTTTCC CTAGCGCATT AGAGCCTGGT
GAATATGGAG AAGCGGAAGA GGAGAATGCA TTGCCTTGGG ATAAGGTGCC TGTTGCTCAG
TACGGCACTT TGGGTGATAT AAACCCAAAT TTAATCTCTA ACTTGGATGT TAAGCATCAA
ACTCGTATCG GCAAAGATGT CGAGTTTGGC TATATCTATC AAGATATTGC TGAGTTTAAA
AAGCACCACG ATGAGAAAAC AGTTTCTTTG GTAGAAAGTG AGCGGATCAG TGAGCGTGAA
GCTAACGACA AAAAGCAATT GGATCGTTTA AATGAGCGCC GTGTTAGCCA AGGTTTGGCC
ATGGTTAAAA GTTTAGACGG TGATGATGAG ACGGAAACTG ACTCAGAAAC AGAGGAAGAG
GTCGAAACAC CAGATGCATT CCTTGATGAG ACCGTTTACA TCACTTTAGA CTTAGTTGAT
ATCGAGCGAG TAGCGAAAAA CCAAGTTAAA TAG
 
Protein sequence
MRKIPLVVSI ASIFVGFSAW ALTPSIPFSE LPALTQEPQH KVASKRVTGL FTRSHYHRFD 
LDDTFSEQVF KRYLKQLDYR RNVMLQSDLD SFGLYSKQFD DMLKSGDLTP AYKMFDLVQK
RRYERFAYAL SLLDKEIDFT VPNDKYQYDR EDAAWPKDEA EINELWRQRV KYDALNLKLT
GKTWEEIVPV LEKRYNNAIK RLSQTKSEDV FQGVMNAFSR TVEPHTSYLS PRNAERFQME
MNLSLEGIGA VLQMDDDYTV IKSLVAGGPA ATSEKLSPED KIVGVGQDGK EIVDVIGWRL
DDVVELIKGP KGSKVVLQIL PKKGGSSAKP FEVVIVRDKI RLEDRAATSE VIEPEEGMYA
NRKVGVIQIP GFYMDLSKDV SKELVKLKEA QVEGIIIDLR GNGGGALTEA TLLTGLFIEQ
GPVVQIRDAN GKVSQNRDND GKVTYSGPLS VMVDRYSASA SEIFAAALQD YDRALIVGES
TFGKGTVQQH KSLGRIYDMY EKPIGHVQYT IAKFYRINGG STQLKGVTPD ISFPSALEPG
EYGEAEEENA LPWDKVPVAQ YGTLGDINPN LISNLDVKHQ TRIGKDVEFG YIYQDIAEFK
KHHDEKTVSL VESERISERE ANDKKQLDRL NERRVSQGLA MVKSLDGDDE TETDSETEEE
VETPDAFLDE TVYITLDLVD IERVAKNQVK