| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2057 |
|---|
| Symbol | |
|---|
| ID | 6116320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2522801 |
|---|
| End bp | 2524714 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641633560 |
|---|
| Product | arginine decarboxylase |
|---|
| Protein accession | YP_001760436 |
|---|
| Protein GI | 170726410 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
|---|
| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.126213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.137004 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATT GGTCTATTAA TGATGCCCGC ACAGGGTATA ACGTTAATTA TTGGAGTCAG
GGACTCTACG GCATCAGCGA TGAAGGTGAA GCAACTGTAT CACCAGATCC AACTCGACCT
GAGTGCAGTA TAGGGCTCAA CGAACTGGCA AAAGATATGG TTAAGTCAGG GGTTAACCTG
CCTGTGCTGG TACGTTTCCC ACAGATATTA CACCACAGGG TGAATAGTCT GTGCCAAGCA
TTCAACCAAG CGATACAGAA GTATCAATAT CAAGCCGACT ACCTGTTAGT TTACCCGATT
AAAGTCAATC AGCAGCAAAC GGTTGTTGAG GAGATCTTGG CCAGTCAGGT TGAGAAAGAG
GTGCCTCAAT TAGGATTAGA GGCGGGCAGT AAGCCTGAGC TAATGGCTGT ATTGGCCATG
GCCCAAAAAG CCAGTTCAGT GATCATCTGT AACGGTTATA AAGATATCGA ATATATCCGT
TTGGCATTGA TCGGTGAAAA ACTGGGTCAT AAAGTCTATA TCGTGCTCGA GAAGTTATCT
GAGTTAAAAA CGGTATTAGA GGAATCAAAA AAGCTGGGCG TGACACCACG TCTGGGTTTA
CGCGTACGCC TTGCGTTTCA AGGTAAAGGA AAGTGGCAAG CCAGTGGTGG TGAGAAGTCT
AAATTTGGCT TGTCAGCCTC TCAGGTATTG ACGGTAATTG AGTCGCTTAA GAGTGAAGAG
ATGCTTGATT CACTTCAGTT GCTGCATTTC CATTTAGGCT CTCAAATTGC CAATATTCGC
GATATTCGCC AGGGCGTGAG TGAAGCGGGT CGTTTTTACT GTGAGCTGCA AAAGCTCGGC
GCGAACGTAA AGTGTTTTGA TGTCGGTGGT GGCTTAGCTG TCGATTATGA TGGCACCCGT
AGCCAGAGCT CAAGTTCCAT GAATTACGGC TTAACGGAAT ATGCGAACAA TATCGTTAGT
GTCTTGACCG ATATCTGTAA TGAGTATGAG CAGCCGATGC CGAGGATTAT CTCAGAATCA
GGCTGCTATT TGACTGCGCA TCATGCAGTG TTGATAACAG ATGTGATTGG TACTGAAGCT
TATAAGCCTG AAGATATCCA GCCGCCAGCT GAAGATGCAC CTCAGTTGCT GCATAACATG
TGGCACTCTT GGAATGAGAT CAGTGGCAGA GCAGATCAAC GAGCATTGAT TGAGATCTAC
CATGACTGTC AGAGCGATCT GACTGAGGTA CACTCTCTGT TTGCTTTAGG CCAGCTATCA
CTGACTGACA GAGCATGGGC AGAGCAGGTC AACTTAAGGG TTTGTCATGA GCTGCAAGGC
GTCATGAGCA GTAAGTACCG CTTCCATCGT CCGATCATCG ATGAGTTGAC AGAAAAGTTA
GCCGATAAGT TCTTCGTTAA CTTCTCATTG TTCCAATCTC TTCCGGATGC GTGGGGTATC
GATCAGGTGT TCCCGATCAT GCCACTTTCT GGTCTAGATA AAGCGCCAGA GCGCCGTGCT
GTGATGTTAG ACATCACCTG TGACTCAGAC GGTACTATTG ATCAATATGT TGATGGTCAA
GGCATTGAAA CAACACTGCC AGTTCCAGCA TGGAGCGCAG AGAGCCCCTA TTTGATAGGT
TTCTTCCTTG TGGGCGCATA TCAAGAGATC TTAGGTGATA TGCATAACCT ATTTGGTGAT
ACTAACTCTG CAGTGATCCG TCTTGATGAC GATGGCCGAA CTAATATTGA ATCAGTATTG
GCCGGTGATA CCGTTGCAGA TGTGCTTAGG TACGTTAACT TAGATGCTGT GTCATTTATG
CGTACCTACG AGGAGCTAGT GAATAAGCAT ATTCAGGAAG ATGAGAGAGC GAATATACTC
GAAGAGCTGC AGTTAGGCTT AAAAGGGTAT ACCTATCTTG AAGATTTCTC ATAA
|
|---|
| Protein sequence | MSNWSINDAR TGYNVNYWSQ GLYGISDEGE ATVSPDPTRP ECSIGLNELA KDMVKSGVNL
PVLVRFPQIL HHRVNSLCQA FNQAIQKYQY QADYLLVYPI KVNQQQTVVE EILASQVEKE
VPQLGLEAGS KPELMAVLAM AQKASSVIIC NGYKDIEYIR LALIGEKLGH KVYIVLEKLS
ELKTVLEESK KLGVTPRLGL RVRLAFQGKG KWQASGGEKS KFGLSASQVL TVIESLKSEE
MLDSLQLLHF HLGSQIANIR DIRQGVSEAG RFYCELQKLG ANVKCFDVGG GLAVDYDGTR
SQSSSSMNYG LTEYANNIVS VLTDICNEYE QPMPRIISES GCYLTAHHAV LITDVIGTEA
YKPEDIQPPA EDAPQLLHNM WHSWNEISGR ADQRALIEIY HDCQSDLTEV HSLFALGQLS
LTDRAWAEQV NLRVCHELQG VMSSKYRFHR PIIDELTEKL ADKFFVNFSL FQSLPDAWGI
DQVFPIMPLS GLDKAPERRA VMLDITCDSD GTIDQYVDGQ GIETTLPVPA WSAESPYLIG
FFLVGAYQEI LGDMHNLFGD TNSAVIRLDD DGRTNIESVL AGDTVADVLR YVNLDAVSFM
RTYEELVNKH IQEDERANIL EELQLGLKGY TYLEDFS
|
|---|
| |