Gene Swoo_2042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_2042 
Symbol 
ID6116305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2509074 
End bp2509820 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content44% 
IMG OID641633545 
Product3-oxoacyl-(acyl-carrier-protein) reductase 
Protein accessionYP_001760421 
Protein GI170726395 
COG category[I] Lipid transport and metabolism
[R] General function prediction only
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.91929e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00609535 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGTGTAA GTATAGATTT AGCTGGAAAA GTGGCGTTAG TAACAGGGGC TAGCCGTGGT 
ATTGGCCGTG CGGTTGCTGA AACACTGGTT GCAGCTGGTG CAAGAGTTGT TGGCACAGCG
ACAAGTGAGC GTGGTGCTGC CGCAATTCAA GAATACCTCG GTGATAATGG TCTAGGTCTT
GTTTTAAATG TAACAGATGG TCAATCTGTT ACCGATCTTT TTGCTGCTAT CAAAGAGAAA
GAGGGCGATG TTAACATTTT AGTAAATAAT GCCGGAATTA CTCGAGATAA TTTATTGATG
AGAATGAAAG ACGATGAATG GGGTGATATC ATAGATACGA ACCTGACATC GATATTTCGT
ACATCAAAAG CGGTTATGCG CCCTATGATG AAAAAACGTC ATGGACGCAT CATTAATATC
GGTTCTGTTG TAGGCTCTAT GGGGAATCCT GGCCAAACAA ACTATTGTGC AGCTAAAGCT
GGGTTGATAG GATTTACAAA ATCTCTTGCA AAGGAGGTTG CATCTCGTCA AATAACAGTG
AATGCTATTG CTCCTGGATT TATTCAGACG GACATGACCG ATGAGCTGAC TGAAGAGCAG
CAACAAGGTA TCATGTCTCA GGTGCCGATG GAGAGACTTG GGCAAGCACA AGAGATCGCT
AATGCTGTGC TGTTTTTGGC TTCAGACTCT GCTGCGTACA TCACTGGAGA GACTCTCCAT
GTGAATGGCG GCATGTATAT GGTTTAA
 
Protein sequence
MSVSIDLAGK VALVTGASRG IGRAVAETLV AAGARVVGTA TSERGAAAIQ EYLGDNGLGL 
VLNVTDGQSV TDLFAAIKEK EGDVNILVNN AGITRDNLLM RMKDDEWGDI IDTNLTSIFR
TSKAVMRPMM KKRHGRIINI GSVVGSMGNP GQTNYCAAKA GLIGFTKSLA KEVASRQITV
NAIAPGFIQT DMTDELTEEQ QQGIMSQVPM ERLGQAQEIA NAVLFLASDS AAYITGETLH
VNGGMYMV