| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2033 |
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| Symbol | |
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| ID | 6116296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2501162 |
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| End bp | 2502121 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641633536 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_001760412 |
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| Protein GI | 170726386 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.904373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0708013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGCG AATCTCCCAA AATAAAAGTC CAACTGGTAA CCATTGATGA AGATCATGTT
GGTCAACGCA TAGATAATTT CCTACTGACT AAGTTGAAAG GTGTGCCTAA AAGCATGATC
TACCGGATTG TGCGTAAGGG CGAAGTCAGG GTAAATAAAA AGCGAATTAA ACCTGAATAT
AAGTTACAGG ATGGGGATAT TGTCAGGGTG CCTCCTGTAC GTGTATCTGA AAAAGATGAG
AGACCAGGTC CTTCGGCTAA TTTGAGTAAA GTATCTCAAT TAGAGGAGCG TATTCTGTTT
GAAGATAAGC ACCTTATTGT GCTGAATAAA CCCGCTGGTC TGGCTGTTCA TGGCGGTAGT
GGCGTCGACT TCGGGATTAT TGAAGCGATG CGCTCACTGC GTCCAACTCA GAAATTTCTA
GAGTTAGCTC ATCGTCTTGA TAAAGATACT TCCGGTGTAC TGCTTATAGC AAAGAAGCGA
AGTGCACTAA GACATCTTCA TGATCAACTT AGGTTTAAGA AGATGCAAAA AGATTATCAG
GCACTGGTTA AGGGGACTTG GCAAGCAAGA GATAAGGCGA TTAAAGCGCC TTTATTAAAA
CTGACTTTAA AGTCCGGTGA GCGAATTGTG CGTGTTAATC AAGAGGGGAA GGAGTGCGAA
ACTCGTTTTA AAATTTTGCA GCGTTATCAA GGCAGCACTT TAGTGCAAGC AAGTCCTGTA
ACAGGTCGTA CTCACCAGAT CCGCGTTCAT TGCCAATATA CTGGTCACCC CATCGCTTGT
GATGAAAAAT ACAGTGAGCA GAAATATGAT GACAGTATGC GTGCTTTAGG GCTCAACCGA
CTTTTTCTTC ATGCGGCTCA ACTGCGTTTT ACTCATCCAG GCAACGAAGA GGTGATGATA
GTGAAAGCTC CGTTAGATCC TGTTTTGACC CAGACACTAG ATAAGTTGAT AAAAGTATGA
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| Protein sequence | MNSESPKIKV QLVTIDEDHV GQRIDNFLLT KLKGVPKSMI YRIVRKGEVR VNKKRIKPEY
KLQDGDIVRV PPVRVSEKDE RPGPSANLSK VSQLEERILF EDKHLIVLNK PAGLAVHGGS
GVDFGIIEAM RSLRPTQKFL ELAHRLDKDT SGVLLIAKKR SALRHLHDQL RFKKMQKDYQ
ALVKGTWQAR DKAIKAPLLK LTLKSGERIV RVNQEGKECE TRFKILQRYQ GSTLVQASPV
TGRTHQIRVH CQYTGHPIAC DEKYSEQKYD DSMRALGLNR LFLHAAQLRF THPGNEEVMI
VKAPLDPVLT QTLDKLIKV
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