Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1982 |
Symbol | tmk |
ID | 6116245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2439980 |
End bp | 2440612 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641633485 |
Product | thymidylate kinase |
Protein accession | YP_001760361 |
Protein GI | 170726335 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0125] Thymidylate kinase |
TIGRFAM ID | [TIGR00041] thymidylate kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.102848 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00478134 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTAAGC AATTGAACAG CAAATTTATT GTCATTGAGG GCTTAGAGGG CGCGGGTAAG TCCAGTGCTA TCTCATTGGT TCGTGATTTT ATCGAAAAGC ACACAGGTGC AGTGCCTGTC TGTACCCGTG AGCCAGGCGG AACACCGCTG GCTGAGCGTA TTCGCGATCT GGTGAAAATT GCCGATGAGA CAGATCCCTT ATGTGATGAA GCAGAGTGCC TGTTATTTTA TGCCGCTAGG GCCCAGTTGG TTGCCAATGT GATTAAGCCT GCCCTTAGGC GCGGTGAGTG GGTGTTAGGC GACAGGCATA ATTTGTCCTC TTTGGCCTAT CAAGGGGGAG GTAGGGGCCT GAGCACTTTA GTTGAGTCTG TGAGTCGTGC GACGTTAGGT GATTTTAAAC CTGATCTGAC CATCTACCTT GATATTGAGC CTAAACTGGG TCTGACTCGT GCGGCTAACC GTGGAGAGCT CGATAGAATT GAAGTTGAAG AGATAGCCTT TTTTGAGCGT GCGAGACACA CTTTTCTCTC CTACGCTCAG CAAGATGACT CAATTCAAGT GATTGATGCT GGTCAAACCA TGGCTGAAGT TCATAAAGAT ATTGTGGCCT TGTTACAGGC GCAGGATTGG TAA
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Protein sequence | MSKQLNSKFI VIEGLEGAGK SSAISLVRDF IEKHTGAVPV CTREPGGTPL AERIRDLVKI ADETDPLCDE AECLLFYAAR AQLVANVIKP ALRRGEWVLG DRHNLSSLAY QGGGRGLSTL VESVSRATLG DFKPDLTIYL DIEPKLGLTR AANRGELDRI EVEEIAFFER ARHTFLSYAQ QDDSIQVIDA GQTMAEVHKD IVALLQAQDW
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