| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1981 |
|---|
| Symbol | |
|---|
| ID | 6116244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2438976 |
|---|
| End bp | 2439983 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641633484 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_001760360 |
|---|
| Protein GI | 170726334 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0643733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0054614 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TTATTATCGC CTTTACCGCA GCCATCTTTA CTCTGTTAAC GTTAGCTGGT
GGTGTTAGTT TATGGACCTA CAATACTGTT GTAGATTTTA GTCAGTCGAC ACTTAAGCTT
GAACAAGCAC AAGATATTGA ATTAAAAAGG GGAACCTCTT TTTATCAATT GGTGAGCTTA
TTAGAGCAAA GGGCGTTAAT CAGTGATGGT TGGAAACTGA AGATTTTGGT TAAGCTTCAT
CCTGAACTGG CTAAGATCCG AACCGGTCTC TATGAAATCA AACCTGGAGA AACTGTGTCG
GGTTTGCTGG AAAAACTCAA TCAAGGTAAA GAGAAGGTAT TTGCAGTTAC TCTAGTTGAG
GGGCAAAGTA TTAAAGAGTG GACTGCCATT TTAAATACCT TGCCGCACAC TGAAACCACC
GAAGATGTGT TTAATCTTGT GCTCAGTGAG CAAGGTGATG ATTCAGCTCT GCCCGAAGGA
AAGTTTTACC CAGATACCTA TCATTATCGC GCTGGGGACA ATATTAAATT ATTAGTCACT
CAAAGTTATA ACAAGATGCA GCAGGAGCTA GAAGCTGCTT GGGCTGGCCG CGCTGATAAT
CTGCCACTGA AGTCTCCCTA TGAACTGCTT ATCATGGCAT CAATTATTGA AAAAGAGACG
GGTAAAGCCA GCGAACGCCC TTGGATCTCG GCGGTATTTA TTAATCGCCT CAATAAAGGG
ATGCGCCTGC AAACCGATCC AACTGTTATT TATGGTATGG GGGAGTCATA TAAAGGGGAC
ATTACCCGTA AAGCGCTGAG AGAGATGACG CCATTTAATA CATACAGAAT TAATGGGTTA
ACACCGACTC CAATTGCAGC GCCAAGTGGT GCAGCCCTGT TAGCTGCGGC GCATCCTGCA
GAGGTCAACT ACCTTTATTT TGTCTCAAAA AATGATGGTA GCCATATATT TTCAAGAACA
TTAGTCGAGC ACAATCGTGC CGTAAACAAA TATCAGAGAA ACAGATGA
|
|---|
| Protein sequence | MKKFIIAFTA AIFTLLTLAG GVSLWTYNTV VDFSQSTLKL EQAQDIELKR GTSFYQLVSL
LEQRALISDG WKLKILVKLH PELAKIRTGL YEIKPGETVS GLLEKLNQGK EKVFAVTLVE
GQSIKEWTAI LNTLPHTETT EDVFNLVLSE QGDDSALPEG KFYPDTYHYR AGDNIKLLVT
QSYNKMQQEL EAAWAGRADN LPLKSPYELL IMASIIEKET GKASERPWIS AVFINRLNKG
MRLQTDPTVI YGMGESYKGD ITRKALREMT PFNTYRINGL TPTPIAAPSG AALLAAAHPA
EVNYLYFVSK NDGSHIFSRT LVEHNRAVNK YQRNR
|
|---|
| |