Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1964 |
Symbol | |
ID | 6116227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2422042 |
End bp | 2423325 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641633467 |
Product | response regulator receiver sensor signal transduction histidine kinase |
Protein accession | YP_001760343 |
Protein GI | 170726317 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00543356 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.092514 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAGC GTCTTCCTAA GATTCTTGTT GTTGATGATG AGCCAAATAA TTTGCGTGTC TATGAGAGGA TTTTAGCCCC TCTGAATCTC GATATTGTTA AGGCCGGTTC GGGACTTAAA GCTTTAGCTG TTGCGCACAA ACATGATTTT TTCTTGATCT TAATGGATGT TCAGATGCCG GGAATGGATG GTTTTGAGAC TGCTTCTCTT ATTTTAGATC ACCCCAAAAC CTCTCATATT CCTGTCATAT TTATTACTGC ATTTGCCCGT GATGAAACTT TTGAGTTTAA AGGGTATATG AATGGCGCCG TTGACTACTT AGTCAAGCCC ATCAACGATG AGATATTAAA GAGTAAAGCT GGTGTGTTTT TAGAGCTTTA CAAGGAGCGT TTAAGATTAG ATAAGGCTTT TAAAACAAAG AAAAAAGCAG AAGAGGAGCT GAAAGTACAT AAGGAAAATT TGGAGGAGAT AGTTAAAGCA AGGACTCAGG AGTTACAACA CTCAATAGAA CATCTATTAA CGACACAAGA TAAGTTAGTA AAAGTAGAAA AGATGGCCTC TTTAGGGCGT TTAGTATCAG GTGTTGCTCA TGAGCTTAAT ACTCCAATAG GCATTTGCGT GACTGCTGCC TCATTCTTGG AGGAGGAAAC CTGCCGGATC AGTGAACATT TACAAGATGA ATCTTTAAGT GCGGAGGATC TAACTAGTTT TTGTGAGTCA TCGATTCAGG GCTCCGAGAT GCTGCTCTCT AACCTCAGTA GAGCCACCAA TTTGATCAAG AAGTTTAAGT TAGTGGCGGT CGATGTGTCG ACTGAGGAGC TATCAAACCT AAATGTGATA GCGCATATTG ATGAAATTAT TATTGAGATC TTACCTGCTT TGGATCTCAC TCACCACCAG ATCACCATTG AGGGAGATAA GGGGATTGTG GTGGAAACTT ATCCTGAAAC ATTAAAACAA GTATTAAAAG AGTTGTTGTT AAACTCGATT ACTCACGCCT TTGAAGAGGA TATCAAGGGT CATGTAATGA TTAAGGTGGA GAAGGTTGAT GAAAGGGTTC GTCTTACTTT TCGTGATGAT GGTTGTGGTA TCGAAGCGGA TACCTTAGCC ATGGTTTTTG AGCCCTTCTT TACTACGCGT CGCGGATCTG GCGCGAGTGG TTTAGGGCTT TATATTGTGT TTAATTTAGC AACCCATGTA CTTAAAGGCG AAGTCATCTG TAATAGTACC TTAGGCAAAG GAACTGAAGT GATTATTACT TTTCCCATAG AGCATAGCTA TTAA
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Protein sequence | MSERLPKILV VDDEPNNLRV YERILAPLNL DIVKAGSGLK ALAVAHKHDF FLILMDVQMP GMDGFETASL ILDHPKTSHI PVIFITAFAR DETFEFKGYM NGAVDYLVKP INDEILKSKA GVFLELYKER LRLDKAFKTK KKAEEELKVH KENLEEIVKA RTQELQHSIE HLLTTQDKLV KVEKMASLGR LVSGVAHELN TPIGICVTAA SFLEEETCRI SEHLQDESLS AEDLTSFCES SIQGSEMLLS NLSRATNLIK KFKLVAVDVS TEELSNLNVI AHIDEIIIEI LPALDLTHHQ ITIEGDKGIV VETYPETLKQ VLKELLLNSI THAFEEDIKG HVMIKVEKVD ERVRLTFRDD GCGIEADTLA MVFEPFFTTR RGSGASGLGL YIVFNLATHV LKGEVICNST LGKGTEVIIT FPIEHSY
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