Gene Swoo_1964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1964 
Symbol 
ID6116227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2422042 
End bp2423325 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content40% 
IMG OID641633467 
Productresponse regulator receiver sensor signal transduction histidine kinase 
Protein accessionYP_001760343 
Protein GI170726317 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00543356 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.092514 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAGC GTCTTCCTAA GATTCTTGTT GTTGATGATG AGCCAAATAA TTTGCGTGTC 
TATGAGAGGA TTTTAGCCCC TCTGAATCTC GATATTGTTA AGGCCGGTTC GGGACTTAAA
GCTTTAGCTG TTGCGCACAA ACATGATTTT TTCTTGATCT TAATGGATGT TCAGATGCCG
GGAATGGATG GTTTTGAGAC TGCTTCTCTT ATTTTAGATC ACCCCAAAAC CTCTCATATT
CCTGTCATAT TTATTACTGC ATTTGCCCGT GATGAAACTT TTGAGTTTAA AGGGTATATG
AATGGCGCCG TTGACTACTT AGTCAAGCCC ATCAACGATG AGATATTAAA GAGTAAAGCT
GGTGTGTTTT TAGAGCTTTA CAAGGAGCGT TTAAGATTAG ATAAGGCTTT TAAAACAAAG
AAAAAAGCAG AAGAGGAGCT GAAAGTACAT AAGGAAAATT TGGAGGAGAT AGTTAAAGCA
AGGACTCAGG AGTTACAACA CTCAATAGAA CATCTATTAA CGACACAAGA TAAGTTAGTA
AAAGTAGAAA AGATGGCCTC TTTAGGGCGT TTAGTATCAG GTGTTGCTCA TGAGCTTAAT
ACTCCAATAG GCATTTGCGT GACTGCTGCC TCATTCTTGG AGGAGGAAAC CTGCCGGATC
AGTGAACATT TACAAGATGA ATCTTTAAGT GCGGAGGATC TAACTAGTTT TTGTGAGTCA
TCGATTCAGG GCTCCGAGAT GCTGCTCTCT AACCTCAGTA GAGCCACCAA TTTGATCAAG
AAGTTTAAGT TAGTGGCGGT CGATGTGTCG ACTGAGGAGC TATCAAACCT AAATGTGATA
GCGCATATTG ATGAAATTAT TATTGAGATC TTACCTGCTT TGGATCTCAC TCACCACCAG
ATCACCATTG AGGGAGATAA GGGGATTGTG GTGGAAACTT ATCCTGAAAC ATTAAAACAA
GTATTAAAAG AGTTGTTGTT AAACTCGATT ACTCACGCCT TTGAAGAGGA TATCAAGGGT
CATGTAATGA TTAAGGTGGA GAAGGTTGAT GAAAGGGTTC GTCTTACTTT TCGTGATGAT
GGTTGTGGTA TCGAAGCGGA TACCTTAGCC ATGGTTTTTG AGCCCTTCTT TACTACGCGT
CGCGGATCTG GCGCGAGTGG TTTAGGGCTT TATATTGTGT TTAATTTAGC AACCCATGTA
CTTAAAGGCG AAGTCATCTG TAATAGTACC TTAGGCAAAG GAACTGAAGT GATTATTACT
TTTCCCATAG AGCATAGCTA TTAA
 
Protein sequence
MSERLPKILV VDDEPNNLRV YERILAPLNL DIVKAGSGLK ALAVAHKHDF FLILMDVQMP 
GMDGFETASL ILDHPKTSHI PVIFITAFAR DETFEFKGYM NGAVDYLVKP INDEILKSKA
GVFLELYKER LRLDKAFKTK KKAEEELKVH KENLEEIVKA RTQELQHSIE HLLTTQDKLV
KVEKMASLGR LVSGVAHELN TPIGICVTAA SFLEEETCRI SEHLQDESLS AEDLTSFCES
SIQGSEMLLS NLSRATNLIK KFKLVAVDVS TEELSNLNVI AHIDEIIIEI LPALDLTHHQ
ITIEGDKGIV VETYPETLKQ VLKELLLNSI THAFEEDIKG HVMIKVEKVD ERVRLTFRDD
GCGIEADTLA MVFEPFFTTR RGSGASGLGL YIVFNLATHV LKGEVICNST LGKGTEVIIT
FPIEHSY