Gene Swoo_1947 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1947 
Symbol 
ID6116210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2393914 
End bp2395101 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content46% 
IMG OID641633450 
Productlytic murein transglycosylase 
Protein accessionYP_001760326 
Protein GI170726300 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02282] lytic murein transglycosylase B
[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.27314e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0135301 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAAAA ATGTCCCTTT AGCATCTCTG CTACTGTTTT CGAGTTTGAG TACACCACTG 
GCCTTTGCGA CTGATTTCCC CTCTTGTGTG GTTGAGCTGC AAAAAACGGC CAAGAGCCAA
GGTTTGTCGG CCGATACGAT TGAAAACACT TTAGGTAAGG TTAAATACGT GGCTCGGGTC
ATTGAGCTAG ATAAAAAGCA GCCAGAGTTT AGTCAGACTT TCGATAACTA CTTCAGTAAG
CGAGTCACAG ATTGGCGTGT GAAAGAGGGG AGGCGTTTAC TCGCTGAGAA TCGTGAGCTT
CTTAATCAAC TGAAAGATAA ATATGGTGTT CCTCCACAAT ATTTAATGGC CTTTTGGGGC
TTAGAGACAA ATTTCGGCTC CTATAAGGGA AAGATGCCTG TTTTAGACTC TTTAGCGACG
TTAGCTTGTG ATCCTAGAAG AAGTGGATAC TTTACCGGTG AGTTGATGAA AGCCCTTAAA
CTCAAAGAGG AGTATCAATT TGAGGCAAGT GAGATGGTGG GCTCATGGGC GGGAGCCATG
GGGCACACTC AGTTCATGCC CTCTGCATAT ACAGCTTATG CGGTAGACGG CGATGGTGAT
GGTAAAGCTG ATCTATGGAA TAGTAGGGCT GATGCGTTAA CCTCTGCGGC AAACTTTCTG
CAGCAACTTG GCTGGCAGCG AAATGAGCGT TGGGGACGTG AAGTTACCCT ACCTGATAAC
TTCAGTTATG AGTATTTAGG TAAGCGCCAT GAACAAGCTT TAGTAAAATG GGCTGAGCTA
GGCGTGATGA AAAATGATGG TAAGCCTATC TCGACACCGG ACATGAAAGC TGCACTTTAC
TTACCTGCTG GTCATACAGG TCCTGCTTTT TTGGGCTATA AAAACTTCGA TGTGATTATG
CGCTGGAACC GTTCGACTTT CTATGTGATT GCCGTCGGTC ACCTTGCTGA TCGTATCAAT
GGTGGCGTTA GCCTAACAGT GGCGCCGCCT AAACAAGATA ACTTAAGCCG AGCACGGGTT
AAGCAACTTC AAGCAAAGTT AAATGAAAAA GGGTTCGATG TTGGTAAACC TGATGGTGTA
TTAGGGGCGA ACTCCAAATC AGGGCTGCGA GAATTCCAGC GTTCTGCAGG CTTAGTTGCC
GATGGCTTTC CAAGTGAGGC AAGTTTTAAT GCACTAGGCG TTCAATAG
 
Protein sequence
MIKNVPLASL LLFSSLSTPL AFATDFPSCV VELQKTAKSQ GLSADTIENT LGKVKYVARV 
IELDKKQPEF SQTFDNYFSK RVTDWRVKEG RRLLAENREL LNQLKDKYGV PPQYLMAFWG
LETNFGSYKG KMPVLDSLAT LACDPRRSGY FTGELMKALK LKEEYQFEAS EMVGSWAGAM
GHTQFMPSAY TAYAVDGDGD GKADLWNSRA DALTSAANFL QQLGWQRNER WGREVTLPDN
FSYEYLGKRH EQALVKWAEL GVMKNDGKPI STPDMKAALY LPAGHTGPAF LGYKNFDVIM
RWNRSTFYVI AVGHLADRIN GGVSLTVAPP KQDNLSRARV KQLQAKLNEK GFDVGKPDGV
LGANSKSGLR EFQRSAGLVA DGFPSEASFN ALGVQ