| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1929 |
|---|
| Symbol | |
|---|
| ID | 6116192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2375755 |
|---|
| End bp | 2377500 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641633432 |
|---|
| Product | gamma-glutamyltransferase |
|---|
| Protein accession | YP_001760308 |
|---|
| Protein GI | 170726282 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0405] Gamma-glutamyltransferase |
|---|
| TIGRFAM ID | [TIGR00066] gamma-glutamyltranspeptidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.127563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.166463 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGT TCAAGACCTT ACTCGTCGCC ATGTCGATAG CAGCCCCGCT CATCACTCTA
TCCTCAGCCT TTGTTTCACC AGCACAGGCT AAAGAAGCAT CTATCTACAG CCATATGGCA
ACGGCGCAGC CTATCTGGGC TAAGCATGGC ATGGTATCTA GTCAGGAAGC CTTAGCCACG
CAAGCTGGTG TCGAGATATT AAAGCAAGGT GGCAACGCCG TAGATGCAGC TGTCGCTGTT
GGCTTTAGTT TAGCAGTCAC CCTACCAAGG GCAGGTAATA TTGGCGGTGG TGGATTTATG
TTAGTTCATC TGGCAGAGCA AAACAGAACC ATAGCAATTG ATTACCGTGA AATGGCGCCT
TCTAAAGCGC ACAAAGATAT CTTCCTCAAT GAGCAAGGCG ACCCAGTTGC CGCGCTCAGT
CGAGAGCATG GCTTAGCCGT TGGCGTGCCT GGCACTGTAA TGGGGATGGA GCTGGCCTTA
CAAAAATACG GCACCATGAC CATGAAACAG GCCACCAACG CCGCCATTAA GATGGCAAAA
AATGGTATTT CTGTGACCCC AGATCTCTCC ACATCACTCA CAGGTTTAAA GCGCCGTATT
GCTCAATGGC CAAGTTCTGC TGAGATCTTT TATAAAGCCG ATGGAAGTGA CTATCAGGTC
GGAGATCTGT TAAAGCAGCC TGAATTAGCT CACTCGCTGT CGCTGATAGC ACAAAAGGGC
AGTAAAGGTT TTTATCAAGG TGAAACAGCC GAGAAACTGG TGGCTGCAAT ACAAGATGCT
GGTGGGATCA TGACATTGGA TGATCTCAAA AACTATAAAG TGGTTGAGCG TAAACCTGTT
CAAGGTGATT ATCGAGGTTA TCAAGTTGTC TCTATGCCCC CTCCTTCATC AGGAGGCGTG
CATATTATAG AGATGCTTAA CATTCTTGAG CAGTTCCCTA TCGATAAGCT TGGCCATAAT
ACTGCTGCTA CCTTACACTT GATGACTGAA TCGATGCGCC GCGCTTATGC CGATCGCAGC
GAATATTTAG GCGATCCAGA TTTTTATAAA GTGCCAGTAC AAGCCCTTAT CAATAAAGAT
TACGCCAAAA AGCTCGCCAG CCAGATAGCC ATCAATAAGG CGACACCCAG TAGCGAAGTA
AAACCCGGTA ACTTAGCCCC CTATGAAAGC AACCAAACGA CTCATTACTC GGTTGTTGAT
AAATGGGGCA ATGCTGTCTC CAATACTTAC ACCCTTAACT TCAGTTATGG CTCAGGTTTA
GTGGCTAAAG GCACAGGAAT ATTACTGAAC AACGAGATGG ATGACTTCTC CGCTAAACCA
GGCACACCAA ATGGCTATGG CTTAGTCGGT GGTGATGCAA ACGCTGTAGA AGGAAATAAA
CGCCCATTAA GCTCCATGAG TCCAACCATA GTGATGAAAG ATGGCAAGCC CTTTATTGTC
ACGGGCAGTC CTGGTGGCTC ACGTATTATC AATACTACGA TGCAGATCAT CATGAATGTT
ATCGATCACG ATCTTAATAT TGCTGAAGCC ACTGCAGCGC CACGTATTCA CCATCAATGG
CAACCGGATC TGTTACGAGT TGAGCATACT TTAAATCGTG ACACCATAGA GCTGCTAAGG
GCTAAAGGGC ATAAGGTGAA AATCAATAAT GCTATGGGCT CTACTCAATC AATTATGGTG
ACAGAGAAAG GCATCTTTGG CGCATCGGAT CCAAGGCGTG CAGGCAGTGA AACCTTAGGC
TATTAA
|
|---|
| Protein sequence | MRAFKTLLVA MSIAAPLITL SSAFVSPAQA KEASIYSHMA TAQPIWAKHG MVSSQEALAT
QAGVEILKQG GNAVDAAVAV GFSLAVTLPR AGNIGGGGFM LVHLAEQNRT IAIDYREMAP
SKAHKDIFLN EQGDPVAALS REHGLAVGVP GTVMGMELAL QKYGTMTMKQ ATNAAIKMAK
NGISVTPDLS TSLTGLKRRI AQWPSSAEIF YKADGSDYQV GDLLKQPELA HSLSLIAQKG
SKGFYQGETA EKLVAAIQDA GGIMTLDDLK NYKVVERKPV QGDYRGYQVV SMPPPSSGGV
HIIEMLNILE QFPIDKLGHN TAATLHLMTE SMRRAYADRS EYLGDPDFYK VPVQALINKD
YAKKLASQIA INKATPSSEV KPGNLAPYES NQTTHYSVVD KWGNAVSNTY TLNFSYGSGL
VAKGTGILLN NEMDDFSAKP GTPNGYGLVG GDANAVEGNK RPLSSMSPTI VMKDGKPFIV
TGSPGGSRII NTTMQIIMNV IDHDLNIAEA TAAPRIHHQW QPDLLRVEHT LNRDTIELLR
AKGHKVKINN AMGSTQSIMV TEKGIFGASD PRRAGSETLG Y
|
|---|
| |