Gene Swoo_1927 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1927 
Symbol 
ID6116190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2371699 
End bp2373876 
Gene Length2178 bp 
Protein Length725 aa 
Translation table11 
GC content44% 
IMG OID641633430 
Productpeptidyl-dipeptidase Dcp 
Protein accessionYP_001760306 
Protein GI170726280 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0339] Zn-dependent oligopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value9.06587e-06 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0591624 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGGAT TAACCCTCAA ACCACTCGTA TCAGCCATTG CACTCACGCT CGCTTTAGGT 
GCATGTAGCA ACACTTCAAC TACAACAGAA ACCAATGTGG CACCCAATGT ACTAGCAGCG
CAAATAATCG AAAATAATGC TTCTAATCCA TTCTTTAAGC CATATGACAC CTATTTTGGT
ATTCCAGATT TCGACAAAAT TAAACCCGAA CATTACCTGC CCGCATTTAA AGCAGGTATT
GCACAACATA AGGCTGAAAT TCAGGCCATC ATCGATAACC CTGCGGCGCC TACTTTTGCA
AATACCATTG AAGCGATGGA GTTTTCTGGA AACTTAACGA CTAAAGTTGC CAGTGTTTTC
TACAACCTAA CTGGTGCAGA CACTAATGAT GAGCTTCAAG CCATCTCTAA AGAGGTGTCG
CCTATGCTTT CAGCTGCCGG TGATGATGTT TTACTCAATG ATAAATTATT CAAGAGAGTG
AAAGCCGTTT ATGAGCAGCG TAAGGGACTA AACCTTAATA CAGCCCAAGC CAAACTACTT
GAAGATACCT ATAAATCATT CACTCGAGGT GGCGCAAACT TAAACGAAGC GGATAAATCA
ACGCTACGTG CCCTAAATGA GCAGATTGGC AAACTAAGCC TAGAGTTTGG TGATAACTTG
TTGGCTGAAA CCAACGCATT CGAACTCGTT ATCGACAATG AAGCGGATCT GGCAGGACTA
CCGAGTGATG TTATCAGCAC GGCAGCGCAA ACCGCTACTA AACGTGGACA TGAAGGCAAG
TGGGTATTTA CCACATCTCG CCCATCAATT ACGCCATTTT TAACCTACGC AGATAACCGT
CAGCTTCGTG AAAAGCTCTA CAAAGGCTAC ATCGAGCGTG CTAACAATGA TAACGCCAAT
GATAACAAAA AAATATTGGC TAAAATGGCA GCCTTACGTG CGGAGCGTGC TCAGCTACTA
GGTTACAAAA CACACGCCCA TTTAGTACTT GAAGAGCGCA CAGCTAAAAC ACCTGAAAAT
GTCTATGAGT TGCTAAACAA GGTATGGCCT GCTGCATTGG GTCAAGCTGA AGCTGAAGTT
GCCGTTATGC AGGAGCTAAT CGATGAGCAA GGTGGAAACT TCAAACTAGC CGCTTGGGAC
TGGGATTATT ATGCCGATAA GATCCGTGTG GCTAAATATA GCTTCAACGA GCAACAAACT
CGCCCTTACT TCTCATTAGA AAATACCCTT AAAGGCGTGT TCTACACGGC TAACCGTTTA
TTTGGTATCA CGGTTAAAGA GCGCACTGAT CTACCTAAGT ACAATAAAGA TGTACGCACT
TGGGAAGTGT ATGACAAAGA TGGCTCACTC ATGGCGATCT TTTTAGGCGA CTACTACGTT
CGTGATAGCA AACGTGGTGG CGCTTGGATG AACTCTTACC GCAAACAATA CGATATGAAT
GGTGTCGACT CTATGCCGAT CATTGTTAAC GTATTGAACT ACCCTAGCCC AATCGGTGAT
GAGCCTTCAC TGCTCACCTT CGATGAAGCA AGTACACTCT TCCATGAGTT TGGTCATGCA
CTTCACGGTA TTCTATCTGA TGTAAAGTAT CGCTCACAGG CTGGTACTTC TGTACCGCGT
GATTATGTTG AATTCCCATC ACAAGTAATG GAAAACTGGA TGACACAACC TGAAGTACTA
GCTCAATTTG CTAAACACTA CAAAACAGGT GAAGTTATTC CTCAAGAGCT GGTTAAAAAG
ATCCAAGCCG CGAGTAAATT CAATCAAGGC TTTGCTACTG TTGAATATAT GGCAGCAACT
AAGCTTGATT TAGATTGGCA CACTATCACA GACTTCACGC CAAAAGATGC GGCTAAGTTT
GAAGCTGACT CTCTGAATAA GATGGGTTTA ATCAGTGAGA TCGCGCCACG CTACCGCAGT
ACATACTTTG CTCATATCTT CTCTGGTGGG TATTCAGCTG GTTACTACAG TTACCTGTGG
TCTGATATCT TAGGTGCGGA TGCATTTGAA GCCTTTAAAG AGAATGGTAT TTTTGATAAA
GCCACTGCCG ATGCATTCAG AAACACAGTC CTTTCACAAG GTGGAAGTGA AGATCCGATG
AAACTCTATA AAGAGTTTCG CGGCAAAGAA GCAGGTATTG ATCCACTCCT TCGCAGCCGT
GGCTTACTGA ATAAGTAA
 
Protein sequence
MKGLTLKPLV SAIALTLALG ACSNTSTTTE TNVAPNVLAA QIIENNASNP FFKPYDTYFG 
IPDFDKIKPE HYLPAFKAGI AQHKAEIQAI IDNPAAPTFA NTIEAMEFSG NLTTKVASVF
YNLTGADTND ELQAISKEVS PMLSAAGDDV LLNDKLFKRV KAVYEQRKGL NLNTAQAKLL
EDTYKSFTRG GANLNEADKS TLRALNEQIG KLSLEFGDNL LAETNAFELV IDNEADLAGL
PSDVISTAAQ TATKRGHEGK WVFTTSRPSI TPFLTYADNR QLREKLYKGY IERANNDNAN
DNKKILAKMA ALRAERAQLL GYKTHAHLVL EERTAKTPEN VYELLNKVWP AALGQAEAEV
AVMQELIDEQ GGNFKLAAWD WDYYADKIRV AKYSFNEQQT RPYFSLENTL KGVFYTANRL
FGITVKERTD LPKYNKDVRT WEVYDKDGSL MAIFLGDYYV RDSKRGGAWM NSYRKQYDMN
GVDSMPIIVN VLNYPSPIGD EPSLLTFDEA STLFHEFGHA LHGILSDVKY RSQAGTSVPR
DYVEFPSQVM ENWMTQPEVL AQFAKHYKTG EVIPQELVKK IQAASKFNQG FATVEYMAAT
KLDLDWHTIT DFTPKDAAKF EADSLNKMGL ISEIAPRYRS TYFAHIFSGG YSAGYYSYLW
SDILGADAFE AFKENGIFDK ATADAFRNTV LSQGGSEDPM KLYKEFRGKE AGIDPLLRSR
GLLNK