| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1908 |
|---|
| Symbol | |
|---|
| ID | 6116171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2349792 |
|---|
| End bp | 2350487 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633411 |
|---|
| Product | aspartate racemase |
|---|
| Protein accession | YP_001760287 |
|---|
| Protein GI | 170726261 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1794] Aspartate racemase |
|---|
| TIGRFAM ID | [TIGR00035] aspartate racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.400117 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAACGA TTGGATTGAT TGGCGGTATG AGTTGGGAGT CGACCCTTAG CTATTATCAA
GCACTTAACC TAGGGGTTAA AGCTGAACTT GGCGGGTTAC ATAGTGCGAA AATAGTACTG
GTTAGTGTTG ATTTTGCTGA GATTGAGAAG CTTCAGCATC TTGGAGAGTG GGACAAGACA
GCAGCGATCT TATCTGAAGC TGCAAGCGGG TTAGAAGCGG CGAACGCTGA CTTTTTCATG
ATCTGTACTA ATACTATGCA CAAGGTTGCA GATGAGGTGC AGGCTAAAGT GAACATCCCG
CTACTGCACA TTGCTGATGC AACTGCTGAG TTATTGGTTA AAGATGGTAT CAAGAAAGTG
GGGTTATTAG GCACCCAATT TACCATGGCT GAATCCTTTT ATAAGGGAAG GCTGACGGAA
AAATACGGTA TAGAGGTACT AACCCCAAGT GATGATGACC AGTCAATCAT TCATCGAGTT
ATCTATGATG AGCTTTGTCA AGGTGTGGTA AATGCACAAT CCCGATCTGC CTATGTGGAG
ATTATTGAAA AGCTGAGGGA CAATGGCGCT GATGCGGTGA TACTAGGTTG TACCGAGATA
GCTATGTTAG TCAAAGAAAC AGACACCAAT GTGCCACTTT ATGACACCAC CGCTATTCAT
GCTGAGGCTG CTGTTAAAAT AGCATTAGAT TGTTGA
|
|---|
| Protein sequence | MKTIGLIGGM SWESTLSYYQ ALNLGVKAEL GGLHSAKIVL VSVDFAEIEK LQHLGEWDKT
AAILSEAASG LEAANADFFM ICTNTMHKVA DEVQAKVNIP LLHIADATAE LLVKDGIKKV
GLLGTQFTMA ESFYKGRLTE KYGIEVLTPS DDDQSIIHRV IYDELCQGVV NAQSRSAYVE
IIEKLRDNGA DAVILGCTEI AMLVKETDTN VPLYDTTAIH AEAAVKIALD C
|
|---|
| |