Gene Swoo_1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1870 
Symbol 
ID6116133 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2311076 
End bp2311936 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content47% 
IMG OID641633373 
Productheat shock protein HtpX 
Protein accessionYP_001760249 
Protein GI170726223 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0501] Zn-dependent protease with chaperone function 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.98337e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.73108e-07 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCGTATTT TTTTATTGAT TGCTACCAAT ATGGCAATCT TACTTGTGGC CTCTATTGTG 
ATGTCACTTC TAGGGGTTAA CACTTCAACC ATGGGCGGAC TGCTTGTATT CGCCGCGATT
TTTGGTTTCG GTGGCGCCTT TATTAGTTTG GCAATCTCAA AGTGGATGGC TAAAAAAACC
ATGGGTTGTG AAGTGATAAC AGCCCCTCGT GATAACACTG AGCGTTGGTT GGTTGAAACC
GTTGCTCGTC AAGCCGAGCA AGCTGGCATT AAGATGCCAG AAGTGGCTAT CTACCAGTCA
GAAGAGCTGA ACGCATTTGC GACAGGCCCA AGCAAAGATA ATGCACTGGT TGCCGTCAGT
AGCGGATTGC TTTATGGCAT GAGCCAAGAT GAGATTGAGG GTGTACTTGC TCACGAAGTA
AGCCATGTTG CTAACGGTGA TATGGTGACC TTAACCCTTA TTCAAGGTGT AGTGAACACC
TTCGTAATCT TCGCGGCCCG TGTTGTTGCC GGTATTATCG ATAACTTTGT GTCGAGTAAT
GACGAAGAGG GTGAAGGCCT AGGCATGTTC GCATACATGG GGGTTGTCTT TGTTCTGGAT
ATGCTATTTG GTATTCTCGC TTCTATGATC GTGGCTTACT TCTCTCGTAT TCGTGAGTTT
AAAGCCGATG AAGGCGCTGC TAAACTTGCC GGTAAAGAGA AGATGATTGC CGCGCTTGAG
CGTTTACGTC AAGGGCCTGC AACAGGTGCC ATGCCTGCCC AAATGTCTGC ATTAGGCATT
AACGGCAAAA AGTCTATGTC TGAACTAATG ATGAGCCATC CTCCATTAGA GAAGCGTATT
GCAGCACTGC GTAACAGCTA A
 
Protein sequence
MRIFLLIATN MAILLVASIV MSLLGVNTST MGGLLVFAAI FGFGGAFISL AISKWMAKKT 
MGCEVITAPR DNTERWLVET VARQAEQAGI KMPEVAIYQS EELNAFATGP SKDNALVAVS
SGLLYGMSQD EIEGVLAHEV SHVANGDMVT LTLIQGVVNT FVIFAARVVA GIIDNFVSSN
DEEGEGLGMF AYMGVVFVLD MLFGILASMI VAYFSRIREF KADEGAAKLA GKEKMIAALE
RLRQGPATGA MPAQMSALGI NGKKSMSELM MSHPPLEKRI AALRNS