Gene Swoo_1861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1861 
Symbol 
ID6116124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2300905 
End bp2302953 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content45% 
IMG OID641633364 
Product4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 
Protein accessionYP_001760240 
Protein GI170726214 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1
[COG3302] DMSO reductase anchor subunit 
TIGRFAM ID[TIGR02951] DMSO reductase, iron-sulfur subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.132192 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000573852 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTATAG AAAACATAGA AGAGCCAAAA ATAACAGCTA GCATCAAGAA AGTTGATGTC 
GATCTGTATA TCCCTGAGCA GGCAACGAGT ACAAGTTCAA AAAAAGAGAC GGCCTCAAAT
AGAGCTGAGG AGAATAAAGA GCAACAGGGA CGCTCAAATC ACTGGGAAGT GAGAACAGAT
GAGCAAGCTT ATGCTTATTT GCCAAAAACA GAAAGTGAAA TTGAAAATCG TTACGGCAAG
CGAATTGATC TTGTTGAGTT GACCGATAAA CCGGTAGGTC GCTCCATGTT TATTAATGAC
AACCCGCAAG TTGGCACTAA TTCAGATCGT AATAAACAGC ATGGGTTTTT CTTTACCGCC
GATAACTGTA TCGGCTGTCA TGCCTGTGAG TCAGCCTGTT CTGAGAAGAA TGATAATCCT
GCGCACTTGG CATTTCGCTC TGTAGGGTAT GTGGAGGGGG GCTCATACCC AGATTATAAA
CGGATGAATA TCTCCATGGC CTGTAACCAT TGTGATGATC CGGTGTGTTT AAAAGGGTGT
CCAACGAGGG CATACACCAA ACATGCGGAG TATGGCGCTG TATTGCAAGA CCCTGAGACC
TGTTTTGGTT GCGGTTACTG CACTTGGGTT TGCCCCTACA ATGCACCTCA GTTAGATCCA
GTAAAAGGGC AGGTATCTAA ATGTAATATG TGTGTCGATA GGCTCGAAGT TGGACTTAAG
CCTGCTTGTG TGTCGGCGTG TGTGGGTAAC GCGCTCGATT TTGGCGTGAT AGAGAATACA
CCAGAGAACA GAGAGCAGTG TAAAACCGCT ATACCTGGCT TTCCATCTCC TGAGATCACC
CATCCCAATA TTCGTTTTCA GCAGACAAAA ACACTACCTG ATGAGCTGAC TCGCACTGAC
AATATGCCAG TTAAATACCA TAAGGATCCC CAAGGTCATT ATCAGCCTGT GGTGGATCAA
AAGGTGGGTA AGCAAAAACA TTGGAATCTG CAAAAGTTAA ACAGTCGAGA AAACCCTCTG
GTGCTATTTA CCTTGTTGGC GCAAGCTGCA CTGGGGGCAT TTATCATTCC ATTTTTAGGG
GCACTAGCAG GCATAGAGAT GTTTGAGGTA TTTATCGGCT CTAACTTCTT CCTGCCATTG
GTGTTACTTT CAATTGTGCT GATGTCACTG GGCTTATTTA TGAGTGTGAC TCACTTAGGC
AAACCTTTTC GTTTTTACCG AGGTTTTAAT AATCTGCGTT ACTCACCCAT GAGCCGCGAA
GGTTTTGGTT TAGCGATGTT CTCAGCAGGC CTTGGAGTGA CTTCACTGTT ACTTTTACCA
AGCAATGCGT GGGTTATCAG CTCAATAAAC CAGCTAATTG GGGTTGATTT ATCTGCGTCA
GTATCAGGAT TAACCTTAAA GCCTTGGGTG CTTGGATTTG GGGGATTTGC GACCCTTGCT
GGATTAGCAG GCCTCTATTA TATGAACCAG TGTTATCAAA TTAAGGCCAG ACCCTTCTGG
AATCATTGGC AAACAGTAAC AAGCTTTGTG GGTAACAGCT TGTCTTTAGG CGTTATGGTC
AGTGGTGCAG TTTTACTCAT CTCAATCGAC GTTGAGGGGG CAGGTTTCTC TGATGCACTG
CAGATACTTG GGCTAATATT TGTGCTGGGA CAAATGATAG AGGCGGTTGG CTTGATTGGG
CACAATATGA TGCTTAATCG AAGTGAAAAT GAAGGCGGGG CGGCTCACTA TGTCCAATGC
ACTACATTTG GTAAAACCTA TCTGCTACGT AACTATCTGC TAGGTTTTAA CCTCTTTATG
GGGTGTGGTT TACTGATGAC TGCTCAGGTG CAAGATGTGA GTGAGCCCAT CACTGTTGCA
GTCTGGTTGA GCTTAAGTTT AGTCAATATT GTGACTGCAG TTATCGGCAG GGCGCTATTT
TATAATCTCG TGATCCCGAC GACGATGCCT GGTGCTTTTT TCTGGAAGAA CAAAGGGTTT
GAGCAACACG CAAGGGATGT AGGACTGGCT GATAATCCAG CTTGCGGTGT CGCGCCTTTA
GCTCATTAA
 
Protein sequence
MSIENIEEPK ITASIKKVDV DLYIPEQATS TSSKKETASN RAEENKEQQG RSNHWEVRTD 
EQAYAYLPKT ESEIENRYGK RIDLVELTDK PVGRSMFIND NPQVGTNSDR NKQHGFFFTA
DNCIGCHACE SACSEKNDNP AHLAFRSVGY VEGGSYPDYK RMNISMACNH CDDPVCLKGC
PTRAYTKHAE YGAVLQDPET CFGCGYCTWV CPYNAPQLDP VKGQVSKCNM CVDRLEVGLK
PACVSACVGN ALDFGVIENT PENREQCKTA IPGFPSPEIT HPNIRFQQTK TLPDELTRTD
NMPVKYHKDP QGHYQPVVDQ KVGKQKHWNL QKLNSRENPL VLFTLLAQAA LGAFIIPFLG
ALAGIEMFEV FIGSNFFLPL VLLSIVLMSL GLFMSVTHLG KPFRFYRGFN NLRYSPMSRE
GFGLAMFSAG LGVTSLLLLP SNAWVISSIN QLIGVDLSAS VSGLTLKPWV LGFGGFATLA
GLAGLYYMNQ CYQIKARPFW NHWQTVTSFV GNSLSLGVMV SGAVLLISID VEGAGFSDAL
QILGLIFVLG QMIEAVGLIG HNMMLNRSEN EGGAAHYVQC TTFGKTYLLR NYLLGFNLFM
GCGLLMTAQV QDVSEPITVA VWLSLSLVNI VTAVIGRALF YNLVIPTTMP GAFFWKNKGF
EQHARDVGLA DNPACGVAPL AH