| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1811 |
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| Symbol | |
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| ID | 6116074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2238671 |
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| End bp | 2242144 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641633314 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001760190 |
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| Protein GI | 170726164 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000258386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0877788 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAT TTTCCGTATT AACGCCGCCC CATGTTAAAA GTGCCACCAA AGCACAAACT
CTGTTCACAT TAGGCGGCGC ATCGCAGGCC ATCACCTTAG CTAATTTAGT CAAGGATCAT
GAGGGGCTGA CACTGGCAGT CACCAGTGAT ACCCCAACTG CGCTTCTATT AGAGAGCGAA
CTAAATTATC TTCTTCAGGA CGACACTCTT CCTGTTTGGT TGTTCCCTGA TAGAGAAACC
TTGCCATACG ATAGTTTCTC CCCCCATCAA GATCTGGTTT CACAACGTCT GGAAACTCTG
TCACAGATCC CGAATGCTAA ACGGGGAGTA GTGATAGTCC CCATCAGTAC TCTGATGGTT
CTTCTGCCAC CAAGATCATT TCTAGCCGGC AACGTATTGA TGTTGGCTAA AGGTGATAAC
TACTGCCTTC AAGATGTTAA ACAGCAATTG GTGGATACCG GTTATCACCT CGTTGAACAA
GTTTATGAAC ACGGAGAGTT TGCTGTAAGA GGCTCGATTA TCGATCTGTT CCCAATGGGC
TCAACTCAGC CCTATCGTAT CGAACTGTTT GACGATGAAG TGGAATCGAT AAGACATTTT
GACCCTGAAA CTCAACGTTC CAGTAGTGCC ATCGACTCAA TTCGTTTATT GCCAGCAAAA
GAGTTCCCCA CAGACAGTGC GGCTATCGAA GGGTTTAGAC AAAGGTACCG ACGTCATTTT
GAAGTGATAG TCAAAGAGCC AGAATCTGTT TATCAGATGG TGAGCCGCAA AATACTTCCA
GCTGGGATTG AGAACTACCT ACCACTTTTT TTCGATGAAA CGGCAAGCCT ATTTGATTAC
CTGCCCGCTC AGACTCAACT GGTTAACATT GGCGATCTTG AAGCCGCTTC AAGAGCACAC
CTTACTGAGG TAGAGCTTAG ATATGAAGAC AGACGCGTCG ATCCACTTAG ACCTCTGTTA
CCGCCAAAGT CACTATACCT GCTGACCGAG CAGCTTTTTT CCGCCTTTAA AAAGTTCCCT
AGAACTCTGC TTAAAATAGG TGAAAATCAA GACAGTGGCA GTAATGCCAA GCTCGAATCA
CTGCCAGAGT TAACAGCAAA CCATAAACTT AAACAGCCAC TGACACTACT TCAAGATTAT
GCCACTCAGG GCGGCAGGAT CCTCTTTAGC GCCGAATCTG AGGGGCGTCG TGAAGCACTG
CTTGAGCTAT TTGCCAAAAT AGACCTTAAG CCACAAGTGT TCGAACATCT AGATGATTTT
GTCGACTCAA AAGTCAAGCA AGGCCTTATT GTCTCGCCTT TATCTAAAGG CGCTATTATC
GAAAAAGCCA GAGGGGCTAA GTTCAGCATC ATCTGTGAAA CAGAGTTATT TGGCCACCGT
ATCTCGCAAA CAAGGCGCCG AGATAAACAG AGACAGATAA GCAGTGATGC CCTGATTAAG
AACTTGGCAG AGCTCAAGGT GGGCCAACCT ATTGTTCACT TAGATCACGG TGTCGCCCAT
TATCAAGGGC TCGAAACCCT CGACACTGGA GGACTCGTCG CTGAGTACCT TAAACTTGAA
TATGCTGGTG GAGACAAACT ATATGTTCCC GTCTCCTCTT TGCACCTTAT CAGTCGCTAC
AGTGTCGGCC CAGATGAAGA GGCTCAGCTT AATAAACTAG GTAATGAGAG CTGGGCAAAA
GCGAAGAAAA AGGCGATTGA AAAGATACGT GATGTCGCAG TGGAACTACT CGATGTTTAT
GCCAGAAGAC AGGCTAGACC TGGCGATGCC TGCCATATTG ATCAAGAGGA GTACGCCCTC
TTTAGTAACA GTTTCCCATT TGAGGAGACT GTGGATCAAG AAACCTCCAT TAATGCCGTA
TTAACCGATA TGAGCTCCCC TATCGCCATG GACAGATTAG TGTGTGGTGA TGTCGGTTTT
GGTAAAACTG AAGTCGCCAT GCGCGCGGCG TTTGTTGCAG TCAATGACGG TAAACAGGTC
GCTATTTTAG TTCCAACAAC CCTGCTGGCA CAGCAGCACT TTGAAAATTT CAAGGATAGG
TTTGCCGATT GGCCAGTTAA AATTGAGGTC ATGTCGCGCT TTAAAACAGC AAAAGAGCAA
AAAGCCGTAT TAGAGGATCT GAGTAATGGC AAGGTCGATA TCGTTATCGG TACTCATAAG
CTACTGCAAT CTGAGGCGAA ATTTGAAAAC TTAGGCCTGC TTGTTATTGA TGAAGAGCAT
AGGTTTGGTG TTCGCCAAAA AGAGAAGATT AAAGCCCTCA GAGCCAATGT TGATATCTTA
ACCTTAACGG CCACCCCGAT CCCACGAACC CTAAACATGG CCATGTCTGG TATGCGTGAC
CTTTCCATCA TTGCGACTCC ACCAGCTAAG CGACTTGCAG TCAAAACTTT TGTTAGAGAG
TATGACAACG CTGCGATTAG GGAAGCACTG CTGCGTGAGA TATTACGTGG GGGCCAAGTT
TATTTTCTCC ATAACACAGT GGAAACCATC GAGAAACGTG CTGCTGAGAT CAGTGAACTG
CTACCTGAAG CCCGTGTGAT CACCGCCCAT GGACAGATGC GAGAGCGTGA ATTAGAAAAG
GTGATGTCTG ATTTTTATCA TCAAAGATTC AATGTCTTAG TCTGTACTAC TATCATAGAA
ACTGGTATCG ATATTCCATC GGCAAACACC ATAGTAATAG AGCGTGCTGA CAAATTTGGA
CTCGCTCAGC TACACCAACT AAGAGGCCGC GTGGGACGCT CACATCATCA AGCGTACGCC
TACTTAATGA CGCCACATCC TAAGAGCATG ACAAAAGATG CAAGGAAGCG TCTCGAAGCC
ATTGGTGCAC TAGAAGATCT CGGTGCAGGC TTTATGTTAG CGACTCAAGA TCTCGAGATA
CGTGGCGCCG GAGAGCTCTT AGGTGACGAG CAGAGCGGCC ATATCTCAAA AATTGGTTTT
ACACTCTACA TGGAGATGCT TGAGGATGCC GTTAAATCTT TAAAAGAGGG TAAAGAGCCT
TCATTAAGCC AGATGCTAAG GCGTCAGTGT GAAATCGATC TTCGCATTCC TGCACTGCTG
CCCGAAGACT TTGTCCACGA TGTGAATATC AGACTCTCTC TTTACAAGCG GATAGCTAAC
TGTGAAACAT CGCAAGCGTT GGATGAATTA AAAGTCGAGT TAATCGACCG CTTTGGACTC
CTACCTGACT CCACTAAAAA CTTGATGGAG TTAACGCTTT ACAAGCACCA AGCTACAGCC
TTAGGCATCA AAAAAATAGA GATGCATGCC AAAGGTGGTA GCCTAGAGTT CAGCGACGAT
CATAGTGTCG ATCCAGGTTT TATTATCGGT TTACTGCAAA GCCAACCACA AAACTATCGA
ATGGACGGCC CGAGTAAGTT AAAATTCATC ATTCCAGCTG AATCTCACGC AGATAGGTTG
GCGCTGGTTA AATTGCTTTT GGGGCAATTA TCACAACACC GTCTTGGAGA TTAA
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| Protein sequence | MKAFSVLTPP HVKSATKAQT LFTLGGASQA ITLANLVKDH EGLTLAVTSD TPTALLLESE
LNYLLQDDTL PVWLFPDRET LPYDSFSPHQ DLVSQRLETL SQIPNAKRGV VIVPISTLMV
LLPPRSFLAG NVLMLAKGDN YCLQDVKQQL VDTGYHLVEQ VYEHGEFAVR GSIIDLFPMG
STQPYRIELF DDEVESIRHF DPETQRSSSA IDSIRLLPAK EFPTDSAAIE GFRQRYRRHF
EVIVKEPESV YQMVSRKILP AGIENYLPLF FDETASLFDY LPAQTQLVNI GDLEAASRAH
LTEVELRYED RRVDPLRPLL PPKSLYLLTE QLFSAFKKFP RTLLKIGENQ DSGSNAKLES
LPELTANHKL KQPLTLLQDY ATQGGRILFS AESEGRREAL LELFAKIDLK PQVFEHLDDF
VDSKVKQGLI VSPLSKGAII EKARGAKFSI ICETELFGHR ISQTRRRDKQ RQISSDALIK
NLAELKVGQP IVHLDHGVAH YQGLETLDTG GLVAEYLKLE YAGGDKLYVP VSSLHLISRY
SVGPDEEAQL NKLGNESWAK AKKKAIEKIR DVAVELLDVY ARRQARPGDA CHIDQEEYAL
FSNSFPFEET VDQETSINAV LTDMSSPIAM DRLVCGDVGF GKTEVAMRAA FVAVNDGKQV
AILVPTTLLA QQHFENFKDR FADWPVKIEV MSRFKTAKEQ KAVLEDLSNG KVDIVIGTHK
LLQSEAKFEN LGLLVIDEEH RFGVRQKEKI KALRANVDIL TLTATPIPRT LNMAMSGMRD
LSIIATPPAK RLAVKTFVRE YDNAAIREAL LREILRGGQV YFLHNTVETI EKRAAEISEL
LPEARVITAH GQMRERELEK VMSDFYHQRF NVLVCTTIIE TGIDIPSANT IVIERADKFG
LAQLHQLRGR VGRSHHQAYA YLMTPHPKSM TKDARKRLEA IGALEDLGAG FMLATQDLEI
RGAGELLGDE QSGHISKIGF TLYMEMLEDA VKSLKEGKEP SLSQMLRRQC EIDLRIPALL
PEDFVHDVNI RLSLYKRIAN CETSQALDEL KVELIDRFGL LPDSTKNLME LTLYKHQATA
LGIKKIEMHA KGGSLEFSDD HSVDPGFIIG LLQSQPQNYR MDGPSKLKFI IPAESHADRL
ALVKLLLGQL SQHRLGD
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