Gene Swoo_1775 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1775 
Symbol 
ID6116038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2198053 
End bp2198514 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content43% 
IMG OID641633278 
ProductBadM/Rrf2 family transcriptional regulator 
Protein accessionYP_001760154 
Protein GI170726128 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR02010] iron-sulfur cluster assembly transcription factor IscR
[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.175223 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000151325 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACTTA CATCAAAAGG TCGGTATGCT GTTACAGCCA TGTTAGATGT TGCTATGCAT 
TCAACCGCTG GACCTGTTCC GTTGGCCGAT ATTTCTGAAC GTCAGGGGAT ATCACTTTCT
TACCTCGAAC AACTTTTCGC AAAACTCAGA AAGCAAGGAT TGGTTTCTAG TGTCAGAGGA
CCAGGCGGTG GTTACCGTTT AGGCGCTGAT GCAGGAGAGA TATCTGTTGG TATGGTGGTA
CGTGCAGTCG ATGAGTCTGT CGATGCTACC CGTTGCCAAG GGCAAGGAAA CTGTCAAAGC
GGAACTCGCT GTCTTACCCA TTCACTTTGG GGAGATCTGA GTAAGCAGAT TTCTGATTTT
TTAAATGGTA TTAGTCTTGC GGGTTTAATG ACGAAACGAG ATGTACAATT TATCTCTATT
AAACAAGATG AAATACAACA GGAACAAAGA GTAACACTAT AA
 
Protein sequence
MKLTSKGRYA VTAMLDVAMH STAGPVPLAD ISERQGISLS YLEQLFAKLR KQGLVSSVRG 
PGGGYRLGAD AGEISVGMVV RAVDESVDAT RCQGQGNCQS GTRCLTHSLW GDLSKQISDF
LNGISLAGLM TKRDVQFISI KQDEIQQEQR VTL