| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1751 |
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| Symbol | |
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| ID | 6116014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2176203 |
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| End bp | 2176862 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633255 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001760131 |
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| Protein GI | 170726105 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0485075 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0112767 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGATAT TCACTTACAC CCCGCCGTCA ATACCTTGGT TAGATATTCG TTATCAAGAC
AGAGATATGA TTGTGATTAA TAAACCTTCG GGGCTTCTTT CCAACCCAGG TAGAGCGGAA
AACACTTTTG ACTGTGCGCT GACTCGTTTG TTGCAACGCT ATCCTGAAAC CATTTTGGTT
CATCGGCTCG ACTGTGCAAC CTCAGGCATT ATGGTGTTTG CTCTCAATAA AAAAGCAGAG
TCAAATATTA AAACGCAATT TCAAAATCGC CTAAGTAAGA AGACCTATAT TGCAGAAGTT
CAAGGGCATT TAGATAAAAC TGAAGGGGTC ATAGAGTTAG CTATGAAGGC CGATAGTGAA
CGTCCACCAC TGCAAAAGAT AGCTGAAGAT GGGAAGCCCT CAAAAACCTA TTATAAAGTA
CTTGAAAAAA GAGAAAACAG CACACTAGTT GAGTTAAACC CGGTTACCGG ACGTACCCAT
CAGCTTAGGC TACATATGCT TGCAATAGGA CATCCGATTT TAGGGGATGA CTTTTATGGG
GAGCAAGAGG TGATCGATGC ATCACACAGA TTGTGTTTGC ATGCCATGAC CTTGGCTATT
ACTCACCCCT ATTCAGGAAA ACTCATGAGC TTTACCAGTC TACACCCTTT TACAGCTTAG
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| Protein sequence | MQIFTYTPPS IPWLDIRYQD RDMIVINKPS GLLSNPGRAE NTFDCALTRL LQRYPETILV
HRLDCATSGI MVFALNKKAE SNIKTQFQNR LSKKTYIAEV QGHLDKTEGV IELAMKADSE
RPPLQKIAED GKPSKTYYKV LEKRENSTLV ELNPVTGRTH QLRLHMLAIG HPILGDDFYG
EQEVIDASHR LCLHAMTLAI THPYSGKLMS FTSLHPFTA
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