| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1680 |
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| Symbol | |
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| ID | 6115921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2087011 |
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| End bp | 2088939 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641633162 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001760060 |
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| Protein GI | 170726034 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.981888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTTT TTCAGGTGTT ATTCTCTTTA AATCGAACTT ATAAGCGATT AGTTAGTGTT
GGAATCGATA CTGTTTGTTT GCTGGCTTCA TTTTGGTTGG CGCTAATGGT TCGGACTGAT
TCAGTTACCG CTTTTGGCAA TCAAGGGTAC TGGCTTCTTA TTGGCTTAGT TTGGCCTATT
AGTATCATTG CTTTTATGAA GTTGGGTCTA TATCGAGCGG TACTTAGGTA TTTAAGTCTT
CAAGCATTAA CCGCTATCTT GTTAGGTGTA CTGATATCTA CAGTTAGTCT GGTGTTTATC
TCATACTTTG CCAATTTAGG CTTACCTCGT ACAGTTCCCG TTATTTATGC TGCTTTTGCT
TTAGTCTTGA TTGGGGGCTC AAGAGGGGTG ATACGAGCCG CTGTTGGTTC AGGAATGAAG
CGGGAAGGTG AACCAGTTAT TATCTATGGC GCAGGCGTTA GCGGCAGGCA ACTCGTCACT
GCTTTAGTTC AAAGTCACGA ATACTATCCT TTTGCTTTTG TTGATGATGA TGTGACAACC
CATGGCAGTG TTATTCAAGG TGTGCATGTT CACTCTCCTT CGATAGTGCG TAAGCTGATA
AAGCAAAAGC AGGCGACTAA GGTGCTGCTT GCTATTCCAA GTGCCTCTCG TCAGAGAAGA
AAAGAGATTT TACTCTCTCT TGAACCTTTA GCTGTCCAAG TTTTAACACT GCCTGCAATG
GCTGATTTGG TAAGCGGCAA TAAGCTTTAT AGCGACATTA AAGAGGTGGA GATAGATGAT
CTGTTGGGTC GCGATGCCGT TTCCCCAAGA GAAGACTTAC TCAAAGATAA TATTACAGAC
AAAGTCGTGA TGGTCACAGG AGCTGGTGGC TCTATTGGTT CTGAGCTTTG TCGTCAGATA
TTGAAGCAAA GGCCCAGTAA ACTTGTTCTG TTTGAGCTGT CAGAGTTTGG TTTGTACTCA
ATAGAGAAAG AGCTATCTGC AACGGCTATA GAGAATGGGC TTGATGTTGA GATATTTCCA
ATGCTTGGCT CTGTGCAGAG AGAGAATCGT GTTCAGGCCG TAATGGAGTC ATTTCAAGTT
CAGACTGTAT ATCATGCAGC AGCGTACAAA CATGTGCCTT TAGTCGAACA TAATGTGGTC
GAAGGCGTAC GTAATAACGT ATTTGGTACC ATGTATACTG CTCGTGCTGC CATTGCTGCT
AAAGTCGAAA CATTTGTACT TATCTCAACG GATAAGGCGG TACGTCCAAC AAATGTGATG
GGAACAACAA AGCGTATGGC GGAGTTATCC TTACAAGCTT TAGCCAAGGA GTCTCATGCT
ACTCGTTTTT GTATGGTGCG ATTTGGTAAT GTTTTAGGTT CATCTGGCTC TGTCGTACCT
CTGTTTAGAA AACAGATTGC ATCTGGCGGG CCTGTTACCG TTACTCACCC GGAAATTACT
CGCTTTTTTA TGACCATTCC AGAAGCTTCG CAACTTGTTA TTCAAGCTGG CGCTATGGGG
AAAGGTGGAG ATGTCTTTGT TTTGGATATG GGGGAGTCTG TAAAAATTGT AGACTTAGCG
GCTAAGATGA TTCGTTTAAG TGGTTTTGAA GTTCAAGACT CTATCAACCC TGATGGTGAT
ATCTCTATTG AGTTTAGTGG GTTGCGGCCT GGTGAAAAAC TGTATGAAGA GTTGCTAATA
GGTGATGATG TTACCGGTAC AGAGCATGAG CGGATCATGA CAGCCAATGA AGCCTATCTT
TCTTGGGATG AGCTAGAAGT TATTTTGAGT AAGCTTGATA TGGCATGTCA TGAATTTAAC
CATGAAGTTA TTCGGGAAAT TTTGTTAACA ACGCCTACAG GTTTTAATCC AACGGATGGC
ATCTGCGATC TGGTTTGGAA AGTGAAGAAT GAGCAGCAAG GCACAAAAGT TGTGTCATTA
GTATCTTAA
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| Protein sequence | MDFFQVLFSL NRTYKRLVSV GIDTVCLLAS FWLALMVRTD SVTAFGNQGY WLLIGLVWPI
SIIAFMKLGL YRAVLRYLSL QALTAILLGV LISTVSLVFI SYFANLGLPR TVPVIYAAFA
LVLIGGSRGV IRAAVGSGMK REGEPVIIYG AGVSGRQLVT ALVQSHEYYP FAFVDDDVTT
HGSVIQGVHV HSPSIVRKLI KQKQATKVLL AIPSASRQRR KEILLSLEPL AVQVLTLPAM
ADLVSGNKLY SDIKEVEIDD LLGRDAVSPR EDLLKDNITD KVVMVTGAGG SIGSELCRQI
LKQRPSKLVL FELSEFGLYS IEKELSATAI ENGLDVEIFP MLGSVQRENR VQAVMESFQV
QTVYHAAAYK HVPLVEHNVV EGVRNNVFGT MYTARAAIAA KVETFVLIST DKAVRPTNVM
GTTKRMAELS LQALAKESHA TRFCMVRFGN VLGSSGSVVP LFRKQIASGG PVTVTHPEIT
RFFMTIPEAS QLVIQAGAMG KGGDVFVLDM GESVKIVDLA AKMIRLSGFE VQDSINPDGD
ISIEFSGLRP GEKLYEELLI GDDVTGTEHE RIMTANEAYL SWDELEVILS KLDMACHEFN
HEVIREILLT TPTGFNPTDG ICDLVWKVKN EQQGTKVVSL VS
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