Gene Swoo_1649 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1649 
Symbol 
ID6115890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2041269 
End bp2042741 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content44% 
IMG OID641633132 
Productamino acid/peptide transporter 
Protein accessionYP_001760030 
Protein GI170726004 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.1541e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTAG CAAAACCCCA AGGGACGATG CTCGGGCATC CGAAGGGATT GTTCCTGTTG 
TTTACAACAG AGTTATGGGA ACGATTCAGC TATTACGCAA TGCGTGCCAT TTTGGTACTT
TATTTGGTAG ATAGTGTTCA ATCACAAGGT GGTCATGGTT TAGGTTGGAC TAGCGCTGAC
GCCCTCTCTC TTTACGGTAC ATTCACAGGT TTAGTCTATT TAACACCACT TATCGGTGGC
TGGTTAGCTG ATACATATTT AGGCCAACGT CGTGCCATTA TCATTGGTGG TGCCTTAATG
GCCGCAGGCC AATTCATTTT AGGTACACCC CATGCTTGGG TACCAGGAAT GGAAACTGAA
GTTTTCTACC TAGGTCTTGG TGTACTTATT TTAGGTAATG GTCTATTTAA GCCAAATATC
TCAACCATGG TTGGTGATCT TTATGAAGAG GGCGACCACC GTCGTGACGG TGCTTTTACT
ATCTTCTACA TGGGTATCAA CGTTGGTGCA TTCCTTTCAG GTATTATTGT TGGTTCTGTT
GTAGCTTACT TCGACGGTAA CTTCCAAGCA GGCTTCATCT GTGCCGGTAT TGGTATGGTT
CTATCATTAA TTATTCAGTT CATGTTTGCT CAAAAGCTAC TTGGTGATAT TGGTCGTAGA
CCAGCTGCAC AACTTGAAAA AGAGAAAGCT GCTGAAAAAG GTGAAGTACG TAAAGAGCCT
CTGACAAAAG TTGAACGTGA CCGTATCAAA GTTATTATGA TCATGGGTCT ATTCACCATC
ATCTTCTGGG CTGGCTTTGA ACAGGCTGGC GGTCTAATGA ACCTGTTCAC CAATGACTTC
ACAGACAGAA GCATAGGCAG TTGGGAAGTT CCTACGACTT GGTTCCAATC ACTGAATGCG
ATGTTTATCG TTATTTTTGC ACCAGTTGTG GCTTCAATTT GGATCCGCTT AGGTAAGAAT
GAGCCAAACT CGCCAGTGAA ATTTGCTTTA GGTCTTGTTC TGCTGGGTAT CGGCTTCCTA
TTTATGATTG GTGCAGTACT TGAAATGGGC GGCGATGCCA ATGCTAAATC AAGCATGTGG
TGGTTAGTCG GTGCCTACTT CTTCCATACC ATGGGTGAAC TTTGTCTATC TCCAATTGGT
CTTTCAATGG TGACTAAACT TGCTCCGCTA CGTATCGCAT CACTAATGAT GGGTGCCTGG
TTCCTATTCG TTGCTGCAGC GAATAAGATT GGTGGTGTTG TAGGTTCATT TATCGGTCAC
GGTGGTCCAA AAGAGGAGCA ACTTGCCAAT GCAATGTCTA TCTTCGCAGG TATTGCAATT
ACCGCAGCAG CTTCTGGTAT CCTACTTTAC TTTATGGCTG ATAAATTAGT CGACTGGATG
CACGGTGCTG AAGACGGCCC TGTACACACA GAAGAAGAAG CGCTTGAAGA AGAGATGGCT
GTGACTGCAG AGCATGAAGG TATAAAGCAC TAA
 
Protein sequence
MSVAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDSVQSQG GHGLGWTSAD 
ALSLYGTFTG LVYLTPLIGG WLADTYLGQR RAIIIGGALM AAGQFILGTP HAWVPGMETE
VFYLGLGVLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV
VAYFDGNFQA GFICAGIGMV LSLIIQFMFA QKLLGDIGRR PAAQLEKEKA AEKGEVRKEP
LTKVERDRIK VIMIMGLFTI IFWAGFEQAG GLMNLFTNDF TDRSIGSWEV PTTWFQSLNA
MFIVIFAPVV ASIWIRLGKN EPNSPVKFAL GLVLLGIGFL FMIGAVLEMG GDANAKSSMW
WLVGAYFFHT MGELCLSPIG LSMVTKLAPL RIASLMMGAW FLFVAAANKI GGVVGSFIGH
GGPKEEQLAN AMSIFAGIAI TAAASGILLY FMADKLVDWM HGAEDGPVHT EEEALEEEMA
VTAEHEGIKH