Gene Swoo_1618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1618 
SymbolfliF 
ID6115859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2009326 
End bp2011032 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content45% 
IMG OID641633101 
Productflagellar MS-ring protein 
Protein accessionYP_001759999 
Protein GI170725973 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein 
TIGRFAM ID[TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGTAG GTACAAATTC CACATTGGCA AGTGATGATA TTGCCGGTGG TGTTCAGGAA 
GAGAATAAGT CTGGTGGACT TGGCTCATTT GGTGGTGTTG ATATGTTACG CCAAGTGACA
ATGGTGCTTG CACTTGCTAT CTGTCTTGCT GTGGCTGTTT TTGTCATGTT GTGGGCCCAA
GAGCCAGAGT TTCGACCATT GGGTAAAATG GCGACCGAAG ATATGATCCA AGTACTCGAT
GTGTTGGATA AGAACAAGGT TGCTTATAAA ATAGAGGGCG ATGTTGTTAA AGTGCCTGAG
GAGAAGTATC AAGAGGTCAA ATTGATGCTT AGCCGTGAAG GGGTGGATAG CGCGTCAAAC
AGCACTGACT ACCTGAGCCA AGATAGTGGC TTTGGTGTAA GTCAACGAAT GGAACAAGCA
AGGCTTAAAC ACAGCCAAGA GCTAAATTTA GCTAGAGCGA TTGAAGAGCT ACGAAGTGTC
ACTCGTGCAA AAGTGATTTT GGCTATTCCA AAAGAGAATG TGTTTGCCAG AAATCGCTCA
AAACCTAGTG CCACTGTAGT GATTAGTGCA CGCCGTGCAG GTTTAGGTCA GGAGGAGGTC
GATTCGATAG TCGATATCGT TGCTTCTGCT GTACAGGGGT TAGAGCCAAC ACGTGTTACG
GTTACCGATT CTAATGGTCG TTTGCTAAAC TCAGGCAGTC AAGATGGTGT ATCGGCTCGA
GCTAGAAGAG AGCTTGAGTT GGTTCAACAG AAAGAGTCAG AATACCGCAA TAAAGTTGAA
TCCATATTAA TGCCGATCCT TGGCCCTGAA AACTTTACCT CTCAAGTTGA TGTGAGCATG
GATTTTACCG CTGTTGAGCA AACCGCAAAA CGCTTTAATC CAGATTTACC AGCGCTTCGC
AGTGAGATGA CGGTAGAGAA TAGTTCTAAC TCAGGTGCGA TAGGCGGCAT ACCTGGTGCT
TTGAGTAATC AGCCTCCAAT GGAAGCGAAC ATTCCTCAAA ATGCATTAGA CGGTGAACAG
AGTGAAGCAA ATAAGAACCC TGGATCCTCT CATAAAGAAG CAACTCGTAA TTTTGAATTA
GACACCACCA TCAGCCATAC CAGACAACAG ATAGGTGTTG TTAGACGTGT GAGCGTCTCT
GTGGCTGTCG ATTTTAAGCC TGGTCCCGCT GGTGAAGATG GACAGGTCAA TCGAGTACCA
AGAACAGATC AAGAGATGGC TAATATTCGT CGTCTACTTG AAGGGGCTGT TGGTTTTAGT
ACCCAGCGTG GGGATGTTAT TGAGGTGGTA ACTGTTCCCT TTATGGATCA ATTGATCGAT
GAAGCTCCAG CACCTGAATT ATGGGAGCAA CCTTGGTTCT GGCGTGCCAT TAAACTTGCC
ATGGGTGGCT TAGTTATTCT GGCGCTGATC CTGTTTATCG TCCGACCTAT GTTGAAGAAA
CTTATCTATC CAGATAGCAG TAACCTACCT GATGAGCCAA AATTTGGTGA TGAGTTAGCA
GAAATTGAAG ATCAATATGC ATCGGATACT TTGGGCATGT TAAATCGTCC TGATGCTGAG
TACAGCTATA ATGATGATGG CTCCATTTTG ATACCAGATC TGCATAAAGA TGATGATATG
ATTAAGGCGA TTAGGGCACT CGTGGCTAAT GAGCCGGAAC TGTCTACACA GGTCGTTAAG
GGTTGGTTAC AAGACAATGA GCAATAA
 
Protein sequence
MVVGTNSTLA SDDIAGGVQE ENKSGGLGSF GGVDMLRQVT MVLALAICLA VAVFVMLWAQ 
EPEFRPLGKM ATEDMIQVLD VLDKNKVAYK IEGDVVKVPE EKYQEVKLML SREGVDSASN
STDYLSQDSG FGVSQRMEQA RLKHSQELNL ARAIEELRSV TRAKVILAIP KENVFARNRS
KPSATVVISA RRAGLGQEEV DSIVDIVASA VQGLEPTRVT VTDSNGRLLN SGSQDGVSAR
ARRELELVQQ KESEYRNKVE SILMPILGPE NFTSQVDVSM DFTAVEQTAK RFNPDLPALR
SEMTVENSSN SGAIGGIPGA LSNQPPMEAN IPQNALDGEQ SEANKNPGSS HKEATRNFEL
DTTISHTRQQ IGVVRRVSVS VAVDFKPGPA GEDGQVNRVP RTDQEMANIR RLLEGAVGFS
TQRGDVIEVV TVPFMDQLID EAPAPELWEQ PWFWRAIKLA MGGLVILALI LFIVRPMLKK
LIYPDSSNLP DEPKFGDELA EIEDQYASDT LGMLNRPDAE YSYNDDGSIL IPDLHKDDDM
IKAIRALVAN EPELSTQVVK GWLQDNEQ