Gene Swoo_1431 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1431 
Symbol 
ID6115671 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand+ 
Start bp1809899 
End bp1810582 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content48% 
IMG OID641632919 
ProductABC transporter related 
Protein accessionYP_001759818 
Protein GI170725792 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.815325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTATTG AAATAAGTCA GTTAAGTAAA ACCTATAACC CAGAGAGTGA CTTTCCTGTG 
CATGCGGTTC AGTCGCTTGA TCTTACTATC GAGCAGGGAG AGTTCGTTGC TGTGATGGGG 
CCATCTGGCT CAGGGAAAAC TACCTTGCTA AATATGATAG GTGGTATCGA CACCCCCACA 
TCAGGCTGTG TGCTTATTGA CAGTGAGAAT ATTTGCGAGC TGGATGACAA GGCGCTGATC 
GCTTTTAGAC GGGATCACGT GGGCTTTATC TTTCAGGACT ACAGCTTGCT GCCTGTGTTA 
ACAGCACTGG AAAATGTTGA GTTTGTGATG CAGCTGCAGG GACTTAGCGA GAAGGAGTGT 
CGAGCGCGAG CTAGTGAGTT ATTAACTATG GTGGGACTGG GTGAGCAGAT GCACAAGGTG 
CCCTCTAAAC TCTCTGGTGG TCAACAGCAA AGAGTGGCTG TTGCCAGAGC CCTTGCTCCG 
CGTCCACGCT TTGTGATGGC TGATGAGCCG ACAGCAAATC TGGATGCAAA AAGTACGTCT 
GAACTGCTAG ATATCATGCA GAGTCTTAAC GAGAAGGAGG GCACGACCTT TATCTTCTCA 
ACCCATGATC AAAGGGTGAT AAAGCGAGCC AAAAGGGTGA TTGTATTTGA AGATGGTAAG 
TTGACTGAGG ATAAACAGCA GTGA
 
Protein sequence
MSIEISQLSK TYNPESDFPV HAVQSLDLTI EQGEFVAVMG PSGSGKTTLL NMIGGIDTPT 
SGCVLIDSEN ICELDDKALI AFRRDHVGFI FQDYSLLPVL TALENVEFVM QLQGLSEKEC 
RARASELLTM VGLGEQMHKV PSKLSGGQQQ RVAVARALAP RPRFVMADEP TANLDAKSTS 
ELLDIMQSLN EKEGTTFIFS THDQRVIKRA KRVIVFEDGK LTEDKQQ