Gene Swoo_1394 details

Gene Information

• Locus tag: Swoo_1394
• ID: 6115634
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella woodyi ATCC 51908
• Kingdom: Bacteria
• Replicon accession: NC_010506
• Strand: +
• Start bp: 1750240
• End bp: 1753569
• Gene Length: 3330 bp
• Protein Length: 1109 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 641632882
• Product: hypothetical protein
• Protein accession: YP_001759781
• Protein GI: 170725755
• TIGRFAM ID: [TIGR01451] conserved repeat domain

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 0.47721
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCCACC TACGTATGAA ATTACTCTGT ATATCAGTGA CAATGGCGAT GGGTTCTGTG 
CATGCTGCAG AGCTTAGCGT GGACACGCAA AATCAACCTG TGCTCAAGAG CAGTTTAGCG 
AGTAAAGGAA AGTTAAATAA AACAAGCACT GCCACGGGCA ATAATGTTTA TATTGTCGAA 
TTTACCGCTC CCCCTTTAGC AACCTATAAC GGTGGTATTA GAGGCTATAA AGCAACCAGT 
AATAAAATGA CCGGTGCAAA TAAGCTTAAT ACTAAGAGCA AAGAGAGTAA GGCTTACCGT 
AAATACCTTA AAAAGAATCA GCAGAAATTT GTTGCTGATT TAGGTGCGCA AAACAAGGTC 
AAATTTGACT ATCAATATGT GTTTAATGGT GTTGCACTTG AGATGTCAGC TGCCGAAGCT 
AAAGAGCTTG AGTCTAACCC TGATGTTAAA CGCGTTTATC TGGAGCATAT CGAAACCCCA 
GATACAGATT CTGGGCCTAA ATGGATTAAT GCTGACTCTA TCTGGGGTGG CACGCCGAAT 
AATGTTCCTC ACTCTCAAGG TGAAGGGATA GTCGTTGCTG TGCTAGATAC CGGGATCAAC 
CATGGTAACG CTTCATTTTC GGATGTTGGC GGCGATGGTT ACGACCATAC TAACCCGCTG 
GGCTCTGGTA ACTACTTGCC TGGAAGCTAT TGTGATACCC AAGATGCCAG TTTCTGTAAC 
GATAAACTAA TAGGTGCTTG GTCATTTGTT CCCTTAGATA GTAATTACCC AGTTCCTGAA 
GATAGCGACG GACATGGCTC TCATACAGCC AGTACAGTTG CGGGTAATGT TAACCCTATC 
GCTTCTGTTG ATGCACCCAC AACATCGTTA ACTCGTAATG TTTCTGGTGT CGCTCCCCAT 
GCTAATATTA TCGCTTATGA TGTATGTACC GCAGGCTGTC CTGGCTCTGC ACTTTTGGCA 
GCAATTAACC AAGTTGTGGT TGATGCGGCT AATCTTCCCG ATGGCATACA TGCATTGAAC 
TACTCTATTT CTGGTGGAAG CAGCCCCTAT ACCGATGCGG TTGAGATAGG CTTTTTGAAT 
GCAACAGCAG CGGGTATCTA TGTTGCAGCA TCTGCGGGTA ACAGTGGCCC AGGTGCATCG 
ACTTTAGGTC ATCAATCACC TTGGGTATCA ACCACAGGTG CGAGTACTCA TAATCGAAGC 
TTAGTGAATA CACTGCTCGA TATGGACAGT GATCAGGGAC CACTAGCTGA TATCTCTAGT 
GTTGGTTTTA CAGCGGGCTA TGGACCTGCA TCGATTGTCT ATGCTGGCGA TCATCCGACA 
GCCAATGGCA GTCAAAATGA TAGTAATCCA GCTCAATGTC TTGATCCTTT CCCAGCAGGG 
CACTTTAATG GCGAGATAGT GGTGTGTGAT CGAGGCGCTA TTGCTCGTAC GGCTAAAGGT 
CAAAATGTTT TAGCAGGTGG CGCAGGTGGA TTTGTATTAG CAAACCTAGC ATCTAATGGA 
GAGAGTGTTT CAGGTGATGC ACACTATTTA CCTGCACTGC ACTTAGGTGT GACTGCAGCC 
GACACGCTTA AAGCTTGGTT AGCGTCAAAC ACCAATACTG TTGCGTCCAT CTCTGGTTAT 
GAGGTGGTAC TGGATGACAG TTTAGGTGAT ATTATGGCTG GCTTTAGTTC ACGTGGACCT 
AATACCGCAC TGGATATTAT CAAGCCTGAT CTTACCGCCC CTGGAGTGGA TATTCTGGCG 
GCATTGAGTA CTTCAGATCT ATCGCAACCT GATGTGTATG GATTCTTAAG TGGAACCTCT 
ATGTCTAGCC CGCATAACGC AGGCGCCGGT GCCATTGTCT CTGCAGCGCA GCCTGCATGG 
TCACCCTATG CAGTTAGATC TGCCATGATG ATGACAAGTG TTAATACCAG TGTTCTGAAA 
GAGGATGGTG TAACACCTGC AGATCCTTTT GACATGGGAG CTGGGCGTAT TGACCTTGCT 
CGCGCAATAG AAGTTGATCT GATATTGGAT GAAACACCAC TTAATTTCTG GAATGCGAAC 
CCTGAAACCG GTGGCGATCC TAAGACATTA AACATCGCAA GTATGCAAGA TGGTAAATGT 
GTGGGGAGCT GTGAGTGGAC TCGTACCTTC ACAAATACAG CGAAACATAC GGTCCATGTT 
GATTTGAGTA CCAGTGGTGG AGACGCGAGT TACTCTGTGT CGCCTTCTAG ATTAAAGATT 
AAGGGTGGAA AAACGGGTAG CTTTACCGTC AGCGTAGATA GTAGTTTGGC CAGTGGCTGG 
GACTTTGGTC AGGTAGATAT TGCTCGTCGA GGCGATGGGC CTGACATGCA TATGCCGATT 
GCGATCAATG CCGTTACGAG TACAGATGCA GCAGTGTTTA CTAAAACCGT GGATAAAGCC 
GATGCCAGTA ATGGTGACAC TTTGACTTAT GGTATTAACA TCACCAATGG TCAATTAGGT 
GGTAATATTG ACTTAAGCGA TTCGCTACCT GCTGGAGTCA CTGCAATAGC GGGTTCTGAA 
ACTGCGACAA TTGTTGATGG TACCAGTATC TCAGCCTTTA GCTTAAACGG TAACAGCGCC 
AGTTGGACGG GTACTCTTGA TATTGGCTCA ATAGCAGTGA CGCCTTCGGC ATCACCTTTT 
GGATTGTTTC CTTTGGCTAA TCTAGGTATT TCTCCATTAG GCTGTCCATC AGATTGTGAT 
GATGGTGCCT TTAGCTTCAA TGTGCCAGCG TTCCAATATA ATGGCCAAAT GTATACCCAG 
ATGACCATGT CGGTGAACGG AACATTGGAG GTAGGCTCAG CGAGTGGTAA TGCTGCTTCT 
GCATCAATTA ATAAGCTACC TAATGCCACT CCGCCTAATA ACTTGTTGGC TCCTTTCTGG 
TCTGACTTGA ATATGAACGA TGGCGGTAAC ATGTATGTAG GTGTCCTCAA TGCTGGTCCA 
AATCAGTTCA CTGTCTACGA GTGGAACAGT CTTCCTCTCT ATGGAAGCAG TAACGCTGAG 
CAGTACACAT TCCAAGTATG GGTGTTAAAT GGAAGTGCTG GAGGGATCTG GTTTACCTAT 
GGTGGGTTAG GAGATCTTTC TTATGCTTCT GTGGGAGCAG AGAATGAAGA TGGCAGTACA 
GGTTCATCTT ATTATTTCTC AGGTGATGGT TCAGGTATAG CGCCAGGAGC CGATCTGGCT 
GTGAGCTCGG TACAGGGCGG TTCTGCTCAC TTTACTTTCC AAGCAGAAGT GACAGGCTGT 
AGCGCTGGTG AGGGGATTGT TAATCAGGCT GACATTTATG CCGATGATAA TGCTCATGAG 
AAAGCGATTG CAGTGACTAG GTGTAACTAG 

 

Protein sequence

MSHLRMKLLC ISVTMAMGSV HAAELSVDTQ NQPVLKSSLA SKGKLNKTST ATGNNVYIVE 
FTAPPLATYN GGIRGYKATS NKMTGANKLN TKSKESKAYR KYLKKNQQKF VADLGAQNKV 
KFDYQYVFNG VALEMSAAEA KELESNPDVK RVYLEHIETP DTDSGPKWIN ADSIWGGTPN 
NVPHSQGEGI VVAVLDTGIN HGNASFSDVG GDGYDHTNPL GSGNYLPGSY CDTQDASFCN 
DKLIGAWSFV PLDSNYPVPE DSDGHGSHTA STVAGNVNPI ASVDAPTTSL TRNVSGVAPH 
ANIIAYDVCT AGCPGSALLA AINQVVVDAA NLPDGIHALN YSISGGSSPY TDAVEIGFLN 
ATAAGIYVAA SAGNSGPGAS TLGHQSPWVS TTGASTHNRS LVNTLLDMDS DQGPLADISS 
VGFTAGYGPA SIVYAGDHPT ANGSQNDSNP AQCLDPFPAG HFNGEIVVCD RGAIARTAKG 
QNVLAGGAGG FVLANLASNG ESVSGDAHYL PALHLGVTAA DTLKAWLASN TNTVASISGY 
EVVLDDSLGD IMAGFSSRGP NTALDIIKPD LTAPGVDILA ALSTSDLSQP DVYGFLSGTS 
MSSPHNAGAG AIVSAAQPAW SPYAVRSAMM MTSVNTSVLK EDGVTPADPF DMGAGRIDLA 
RAIEVDLILD ETPLNFWNAN PETGGDPKTL NIASMQDGKC VGSCEWTRTF TNTAKHTVHV 
DLSTSGGDAS YSVSPSRLKI KGGKTGSFTV SVDSSLASGW DFGQVDIARR GDGPDMHMPI 
AINAVTSTDA AVFTKTVDKA DASNGDTLTY GINITNGQLG GNIDLSDSLP AGVTAIAGSE 
TATIVDGTSI SAFSLNGNSA SWTGTLDIGS IAVTPSASPF GLFPLANLGI SPLGCPSDCD 
DGAFSFNVPA FQYNGQMYTQ MTMSVNGTLE VGSASGNAAS ASINKLPNAT PPNNLLAPFW 
SDLNMNDGGN MYVGVLNAGP NQFTVYEWNS LPLYGSSNAE QYTFQVWVLN GSAGGIWFTY 
GGLGDLSYAS VGAENEDGST GSSYYFSGDG SGIAPGADLA VSSVQGGSAH FTFQAEVTGC 
SAGEGIVNQA DIYADDNAHE KAIAVTRCN