Gene Swoo_1387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1387 
Symbol 
ID6115627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1742228 
End bp1743187 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content46% 
IMG OID641632875 
Productthiamine-monophosphate kinase 
Protein accessionYP_001759774 
Protein GI170725748 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0611] Thiamine monophosphate kinase 
TIGRFAM ID[TIGR01379] thiamine-monophosphate kinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0324994 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.16996e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
GTGAAAGAAT TTCAATTAAT CGAACACTTT TTTGCCAAGC AAGCTCAGTC ACGCCGTGAC 
GTTGAGCTAG GTATTGGTGA CGACTGTGCT TTAGTGACAC CCGCACTCAA TAAATCCATC
GCAATCTCCT GTGACACCTT AGTCGAGAAT GTTCACTTCT ATCCCGATAT TCCTCCAAAA
GCCTTAGGTT ATAAATCACT GGCGGTTAAT CTGTCTGATC TTGCTTCTAT GGGCGCAGAG
CCTGCTTGGA TGACGTTAGC GCTGACATTG CCAGAAGTGG ATGAGCAGTG GTTAACCAGT
TACAGTGCTG GTCTATTTGA AGCTGCTGAG TATTACAATA TTGCCCTTGT TGGCGGTGAC
ACAACTCTTG GGCCGCGCTC CATCACAATT ACAGTTAATG GGCAGGTACA AGCGGGCACA
GGTTTAACAC GAAGTGGTGC CAGAATTGGT GATTGGATCT ACGTCACTGG CACGCTAGGC
GATTCGGCTT TGGGGCTAGA TCTTATTCGT GGTAACAGGG CGTCGAGTCC TGAAGATGCA
GATTTTTTGA TTAATCGTCA CTACTACCCA ACGCCACGAG TACTTGCAGG TCAAGCCCTT
CGTACGCTGG CTTCAAGTGC TATCGATCTT TCCGATGGGT TACTGAGCGA TATTCAGCAT
CTACTAAAAC AGTCTGGTAT TGGAGCCACT ATCGATGTGG ATCTCTTGCC ACTGTCTGCT
TCTCTTAAAA ACTCTGTAAC AGAGGAGGAA GCACTGAGTT ATGCATTAAC GGGGGGGGAA
GATTATGAGC TGCTCTTTAG TGTTCCAGAA GCACAAAAAG GGGCACTTGA AATAGCTCTC
GCAAATACCG GTGTTTCATT TGCTCAGATA GGCCAGATAA GCACAGGTGA TAAGTTGAAA
CTACTTCGTG ATGGTCAGCC TTACACCCCT ATTAATATTG GATTTGAACA TTTTTCCTGA
 
Protein sequence
MKEFQLIEHF FAKQAQSRRD VELGIGDDCA LVTPALNKSI AISCDTLVEN VHFYPDIPPK 
ALGYKSLAVN LSDLASMGAE PAWMTLALTL PEVDEQWLTS YSAGLFEAAE YYNIALVGGD
TTLGPRSITI TVNGQVQAGT GLTRSGARIG DWIYVTGTLG DSALGLDLIR GNRASSPEDA
DFLINRHYYP TPRVLAGQAL RTLASSAIDL SDGLLSDIQH LLKQSGIGAT IDVDLLPLSA
SLKNSVTEEE ALSYALTGGE DYELLFSVPE AQKGALEIAL ANTGVSFAQI GQISTGDKLK
LLRDGQPYTP INIGFEHFS