| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1365 |
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| Symbol | |
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| ID | 6115605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1716521 |
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| End bp | 1717633 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632853 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001759752 |
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| Protein GI | 170725726 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000256097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000707959 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA GCCTGATTAT TATCCCCATT GTTTTATTGA TTACTGCGAT AGCCTCATTC
AGTGGTTTCT CTGAAGCCAA AAAATCAGCA GATAAAACTG CCCGAGCACC TAGGGTTGTT
CCTGTTGTGA CTGGAAGTGT GGAGCAACAC ATGCTCTCTC AATCACTCTC TTTAATTGGT
AAGCTAGAGG CGGATAGATC TGTATTTATC GCGCCTGAAG TGGCGGGGAA AATTAAGCAG
ATTAACGTTG TTGCTAATCA AGATATCCAA GCGGGTCAGG TGTTAATTCA GCTTGAGGAT
GCTCGGGTTC AGGCGAGTGT TGCCGAAGCG AATGCTTACC TTAATGATGA AAAACGTAAG
CTTAAAGAGT TTCAAAAGTT GATCGCGAAA AGCGCCATCA CACAAACAGA GATTGATGCT
CAGAAAGCCA GTGTTGATAT CGCAGCTGCG CGATTGGCTG CGGCACTTGC AGAGCTTGAT
TTTCACTACA TAAAAGCTCC GTTTTCGGGC ACGGCTGGTT TGCTCGATTT CAGTCTAGGT
AAGATGGTGA CTGCGGGCAG TGAGCTGCTC TCCCTCGATG ATCTCTCTTT AATGAGGTTA
GATCTGCAGG TGCCAGAAAA CTATCTCTCA TTACTCAGCG TTGGCATGAA GGTGAATGCG
ACTAATCGTG CATGGCCAGC AGAGATGTTT AGTGGTCAGG TTGTGGCTAT CGATCCTAGA
GTTAATCACG AAACATTGAG TCTAAAGGTC AGGGTTAGTT TCGATAATGC CAGTCATAAG
CTTAAACCCG GCATGTTAAT GTCGGCCAAT CTAGGCCTTC CTGCGGTATC TGAACCCGTT
ATCCCAGTTC AAGCTATTGA GTATTCTGGC ACGAAACGTT TCGTGTATGT GGTAGGTGAA
GATAAGTTAG CTAAGCGCAC TCAAGTGACA TTAGGCGCGC GAATTAAAGA TGAAGTGGTG
ATCACTCAAG GCGTCGATAT TGGCGAGAAA ATAGTGGTTC AGGGTTTAGT GAATATGCGT
GATGGTCTCA GAGTCGATGA GCTGTTAGCG CCGAAAAGCC ATATGACTGC CGATGCAGAT
CAAGGTGGGA ATAGTAGCGG AGACAGAAGT TAA
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| Protein sequence | MKKSLIIIPI VLLITAIASF SGFSEAKKSA DKTARAPRVV PVVTGSVEQH MLSQSLSLIG
KLEADRSVFI APEVAGKIKQ INVVANQDIQ AGQVLIQLED ARVQASVAEA NAYLNDEKRK
LKEFQKLIAK SAITQTEIDA QKASVDIAAA RLAAALAELD FHYIKAPFSG TAGLLDFSLG
KMVTAGSELL SLDDLSLMRL DLQVPENYLS LLSVGMKVNA TNRAWPAEMF SGQVVAIDPR
VNHETLSLKV RVSFDNASHK LKPGMLMSAN LGLPAVSEPV IPVQAIEYSG TKRFVYVVGE
DKLAKRTQVT LGARIKDEVV ITQGVDIGEK IVVQGLVNMR DGLRVDELLA PKSHMTADAD
QGGNSSGDRS
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