Gene Swoo_1365 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1365 
Symbol 
ID6115605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1716521 
End bp1717633 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content46% 
IMG OID641632853 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001759752 
Protein GI170725726 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.56097e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000707959 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAAAA GCCTGATTAT TATCCCCATT GTTTTATTGA TTACTGCGAT AGCCTCATTC 
AGTGGTTTCT CTGAAGCCAA AAAATCAGCA GATAAAACTG CCCGAGCACC TAGGGTTGTT
CCTGTTGTGA CTGGAAGTGT GGAGCAACAC ATGCTCTCTC AATCACTCTC TTTAATTGGT
AAGCTAGAGG CGGATAGATC TGTATTTATC GCGCCTGAAG TGGCGGGGAA AATTAAGCAG
ATTAACGTTG TTGCTAATCA AGATATCCAA GCGGGTCAGG TGTTAATTCA GCTTGAGGAT
GCTCGGGTTC AGGCGAGTGT TGCCGAAGCG AATGCTTACC TTAATGATGA AAAACGTAAG
CTTAAAGAGT TTCAAAAGTT GATCGCGAAA AGCGCCATCA CACAAACAGA GATTGATGCT
CAGAAAGCCA GTGTTGATAT CGCAGCTGCG CGATTGGCTG CGGCACTTGC AGAGCTTGAT
TTTCACTACA TAAAAGCTCC GTTTTCGGGC ACGGCTGGTT TGCTCGATTT CAGTCTAGGT
AAGATGGTGA CTGCGGGCAG TGAGCTGCTC TCCCTCGATG ATCTCTCTTT AATGAGGTTA
GATCTGCAGG TGCCAGAAAA CTATCTCTCA TTACTCAGCG TTGGCATGAA GGTGAATGCG
ACTAATCGTG CATGGCCAGC AGAGATGTTT AGTGGTCAGG TTGTGGCTAT CGATCCTAGA
GTTAATCACG AAACATTGAG TCTAAAGGTC AGGGTTAGTT TCGATAATGC CAGTCATAAG
CTTAAACCCG GCATGTTAAT GTCGGCCAAT CTAGGCCTTC CTGCGGTATC TGAACCCGTT
ATCCCAGTTC AAGCTATTGA GTATTCTGGC ACGAAACGTT TCGTGTATGT GGTAGGTGAA
GATAAGTTAG CTAAGCGCAC TCAAGTGACA TTAGGCGCGC GAATTAAAGA TGAAGTGGTG
ATCACTCAAG GCGTCGATAT TGGCGAGAAA ATAGTGGTTC AGGGTTTAGT GAATATGCGT
GATGGTCTCA GAGTCGATGA GCTGTTAGCG CCGAAAAGCC ATATGACTGC CGATGCAGAT
CAAGGTGGGA ATAGTAGCGG AGACAGAAGT TAA
 
Protein sequence
MKKSLIIIPI VLLITAIASF SGFSEAKKSA DKTARAPRVV PVVTGSVEQH MLSQSLSLIG 
KLEADRSVFI APEVAGKIKQ INVVANQDIQ AGQVLIQLED ARVQASVAEA NAYLNDEKRK
LKEFQKLIAK SAITQTEIDA QKASVDIAAA RLAAALAELD FHYIKAPFSG TAGLLDFSLG
KMVTAGSELL SLDDLSLMRL DLQVPENYLS LLSVGMKVNA TNRAWPAEMF SGQVVAIDPR
VNHETLSLKV RVSFDNASHK LKPGMLMSAN LGLPAVSEPV IPVQAIEYSG TKRFVYVVGE
DKLAKRTQVT LGARIKDEVV ITQGVDIGEK IVVQGLVNMR DGLRVDELLA PKSHMTADAD
QGGNSSGDRS