| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1356 |
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| Symbol | |
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| ID | 6115596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1705934 |
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| End bp | 1707097 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641632844 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001759743 |
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| Protein GI | 170725717 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00018874 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTGCTC AAACCGTTTC AAAATTAAAA TGGTGCACTC TGTTTATTAT AGGATTGCAA
TTAGCGGCCT GTGGCGACGC TCCTGCACCT AAGCAAGCTA TGTTGCCGAG TGTTATCGTC
AATACGGCTA AAACCGAAGA GATTCAATCT AAGACTGAAA TCGTCGGTCG TACTCATGCT
TCTGAAGATG TGGTAATTAA ATCTCAAATT CAGGGGCAGT TGCTAAAGCG CACTTTTATT
GAGGGGGATG ATATTGATAA AGGGGATCTG TTGTTTGAGA TCGACCCCTC TACTTTTGAG
GCTGAACTTG CTCAACATAA AGCTGTGTTA AAGCAAGCAT TAGCTTCCCG TGATGTGGCG
GTAATGAACT GGGAGCGCGG AAGCCGTTTG TTGCCGGACG GCATGATTAG TGCTCAGGAT
ATGGATGAGC TGACCACCCG TAAGCTGACA ACGGCGGCAG GTGTGGTTCA AGCTGAAGCT
GCAGTTAAGG GCTCAGAGCT TCAATTAAGT TACACCAAAA TTTATGCTCC CATCTCAGGT
CGTATTAGTA ACTCAAAGGT CAGCACTGGT GACATTATCA GCTCTAACTC TGAAATGGCT
AACTTGGTTC AGTTGCAGCC TATGTGGGTT AATTTTCAAG TAGCTGAAAG AGCATTGATC
AATGCTCGTG AGAGCTTTGC TAAGGCGGCG AAGAAAGAGA TCGAGATCTC AGACATCATC
ATAGGGTTAC GCCTGCCAAA TGGCAGTATG TTTTCAGAAA CAGGCTATGT GGACTTTGTG
AGTAACCGTG TCGATGCCGC AACAGGTACT CTACCTATTC GTGCGACCTT CAAGAATGAA
AACAAGCTGA TGTTACCAGG CATGTTTGTC ACCTTAATCA TAGAGTCACC AGTGAAAGAG
AATGCACTGC TTATTCCTCA AGCATCGGTA CAGGAAGATC AACAAGGTCG CTTTGTGATG
GTGCTTAACG ATAAAGATGA GGTTGAGAAA CGTATTGTTG AGTTAGGTGA GCGCTTCGGC
ATCGATTGGC GTGTCTTGAG TGGCCTTAAA GATGGTGAAC GGATTGTGGT TGATGGACTA
CAGAAAATTC GCCCTGGTAT TCAGGTAAAA GCAGTTGAGC AGGAAGTAAT TCCGTTTAAA
GAGTCTCAAA CGGCACCTAA ATAG
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| Protein sequence | MPAQTVSKLK WCTLFIIGLQ LAACGDAPAP KQAMLPSVIV NTAKTEEIQS KTEIVGRTHA
SEDVVIKSQI QGQLLKRTFI EGDDIDKGDL LFEIDPSTFE AELAQHKAVL KQALASRDVA
VMNWERGSRL LPDGMISAQD MDELTTRKLT TAAGVVQAEA AVKGSELQLS YTKIYAPISG
RISNSKVSTG DIISSNSEMA NLVQLQPMWV NFQVAERALI NARESFAKAA KKEIEISDII
IGLRLPNGSM FSETGYVDFV SNRVDAATGT LPIRATFKNE NKLMLPGMFV TLIIESPVKE
NALLIPQASV QEDQQGRFVM VLNDKDEVEK RIVELGERFG IDWRVLSGLK DGERIVVDGL
QKIRPGIQVK AVEQEVIPFK ESQTAPK
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