Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1294 |
Symbol | ispH |
ID | 6115529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1640114 |
End bp | 1641061 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641632777 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_001759681 |
Protein GI | 170725655 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.314544 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGTAG CCCAGAATCT TCAGATCAAG TTAGCTAACC CTCGGGGCTT TTGCGCCGGA GTGGATAGAG CTATCAGTAT TGTAGAGCGA GCTTTAGAAC TGTTTCCTGC ACCTATTTAT GTTCGCCATG AAGTGGTTCA TAACCGCTAT GTGGTGCAAA ACTTGAAAGA TCGCGGTGCG GTTTTTGTAG AAGAGTTAGA TCAGGTTCCA GATAACAGTA TTGTGATTTT CAGTGCTCAT GGTGTTTCGC AAGCTGTAAG GAAAGAGGCT AAACATCGTG GTTTGAAGGT GTTTGATGCG ACCTGTCCAC TTGTTACTAA AGTTCACCTA CAGGTTACCA GAGCTAGTCG CAAAGGGATT GAGTGCATTC TTATTGGTCA TGCAGGTCAT CCTGAGGTTG AGGGGACCAT GGGGCAATAT GATAACCCTG AGGGGGGAGT ATTATTAGTT GAGTCCCCAG CGGATGTCGA ATCGTTAGAG GTTAAAGATC CAAATAACCT CTGTTTTGTT ACTCAAACCA CGCTCTCTAT GGATGATACT GCCGATGTTA TTGAGGCGCT TCAATCTCGC TTCCCAAGTA TACAGGGGCC TCGTAAAGAT GATATCTGTT ATGCAACCCA GAACAGACAA GATGCGGTAA GAAATGTCGC TGACGATGTT GATCTATTTA TTGTTGTTGG TTCTAAAAAT AGCTCTAATT CCAACCGTCT TCGTGAACTT GCACAGAAGA GAGGCACACA ATCTTATTTA GTCGATAACT CTGATGATAT CGATTCAAGT TGGTTTGAAG GTGTTACAAA AGTTGCGGTT ACAGCAGGTG CATCTGCACC AGAAGTACTG GTTCAGCAGG TTATTGATGC AATAGCACAA TTGGCACCTA GCGTGATCAC TGAAGTTGAA GGGCGTAAAG AGGATACGGT TTTCGCTGTT CCTGCCGAGT TAAGGTGA
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Protein sequence | MQVAQNLQIK LANPRGFCAG VDRAISIVER ALELFPAPIY VRHEVVHNRY VVQNLKDRGA VFVEELDQVP DNSIVIFSAH GVSQAVRKEA KHRGLKVFDA TCPLVTKVHL QVTRASRKGI ECILIGHAGH PEVEGTMGQY DNPEGGVLLV ESPADVESLE VKDPNNLCFV TQTTLSMDDT ADVIEALQSR FPSIQGPRKD DICYATQNRQ DAVRNVADDV DLFIVVGSKN SSNSNRLREL AQKRGTQSYL VDNSDDIDSS WFEGVTKVAV TAGASAPEVL VQQVIDAIAQ LAPSVITEVE GRKEDTVFAV PAELR
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