Gene Swoo_1280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1280 
Symbol 
ID6115515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1621525 
End bp1622481 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content44% 
IMG OID641632763 
Producttransaldolase B 
Protein accessionYP_001759667 
Protein GI170725641 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.01503e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0282739 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAATA CACTAGAGCA ATTCAAATCA ATCACCACCA TTGTCGCTGA TACTGGAGAC 
ATTGAAGCCA TCAAGCGTTA TCAACCAGAA GACGCAACGA CTAACCCGTC ATTAATTTTA
AAAGCAGCCC AGATCCCGGA CTATGCACAC CTTATCGAAA ATGCCATCGA ATGGGCTAAA
ACGCAGAGCT CCCAGATTGA CCAGCAAGTA GAAGATGCTG GTGACAAACT TGCTGTTAAT
ATCGGTGTCG AGATATTAAA AATCGTTCCA GGCCGTATCT CTACCGAAGT CGATGCTCGC
CTCTCTTTTG ATAAAGCAGG CTCTATCGCT AAAGCCCACA AGCTTATCAA GCTCTATCAA
GAAGCTGGCA TAGATAAATC TCGTATTCTT ATCAAGCTTG CTTCTACTTG GGAAGGGATC
TGTGCGGCTA AAGAGCTTGA GCAAGAAGGG ATTAACTGTA ACCTGACACT GCTATTTAGC
TTTGCTCAAG CACGAGCATG TGCAGAAGCT GGTGTTTACC TTATCTCTCC TTTTGTTGGT
CGTATCTTAG ACTGGTACAA GAAAGACACT GGACTTGAAT ATTCAGCAAC CGAAGATCCA
GGTGTTGTTT CTGTTACCGA GATCTATAAC TACTACAAGC GTCATGGATT TAACACAGTT
GTTATGGGCG CAAGCTTCAG AAATACTGGT GAAATAATCG AACTTGCCGG TTGTGATCGC
TTAACGATTG GACCAGCTCT TCTTGAAGAG ATGGCCAACT CACAGACTGA AGTTGTACGT
AAGCTTATTC CGGCAGAAAC AACTGTAGAA GCGGGTGAGC CATTAACTGA AGCGCAGTTC
CGTTGGGAGT TTAATGAAAA TCCTATGGCC GTTGAGAAGC TAGCTGAAGG CATTCGTAAC
TTCGCAATCG ATCAAGGTAA GCTGGAAGTA ATGCTTAAAG AGAAACTAAC CTCTTAA
 
Protein sequence
MANTLEQFKS ITTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPDYAH LIENAIEWAK 
TQSSQIDQQV EDAGDKLAVN IGVEILKIVP GRISTEVDAR LSFDKAGSIA KAHKLIKLYQ
EAGIDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG
RILDWYKKDT GLEYSATEDP GVVSVTEIYN YYKRHGFNTV VMGASFRNTG EIIELAGCDR
LTIGPALLEE MANSQTEVVR KLIPAETTVE AGEPLTEAQF RWEFNENPMA VEKLAEGIRN
FAIDQGKLEV MLKEKLTS