Gene Swoo_1253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1253 
Symbol 
ID6115488 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1591417 
End bp1592790 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content48% 
IMG OID641632736 
Productsignal recognition particle protein 
Protein accessionYP_001759640 
Protein GI170725614 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0541] Signal recognition particle GTPase 
TIGRFAM ID[TIGR00959] signal recognition particle protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.9947e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.52283e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTTGAGA ACCTAACGGA CAGACTGTCA CGTTCACTAA AGAATATTAG TGGCCGTGGT 
CGCTTAACAG AAGATAATGT TAAGGAAACC TTACGAGAAG TGCGCATGGC ACTACTCGAA
GCTGATGTGG CTCTACCTGT TGTACGTGAT TTTGTTAACA GCGTAAAAGA GCGTGCGGTA
GGGCAGGAAG TTTCTAAGAG TCTCAGTCCA GGCCAAGCAT TTATTAAGAT AGTCCAGAGC
GAACTTGAAA ACGCGATGGG TGAAGCCAAT GAAGCGTTAG ACCTTTCGGC TCAGCCTCCT
GCTGTGATCA TGATGGCCGG TCTTCAAGGT GCGGGTAAAA CTACCAGTGT CGCGAAACTA
TCTAAGTTCC TACGTGAGCG TGAAAAGAAA TCAGTTTTAG TTGTCAGCGC CGACGTCTAT
CGTCCAGCCG CGATTAAACA GCTAGAAACC TTGGCGACTG AAGTTGAAGT TGAGTTCTTC
CCATCGGATG TCAGTCAAAA GCCTATCGAC ATTGTTAATG CTGCAATGGC CCATGCCAAA
TTGAAGTTTA TCGATGTGGT CATTGTCGAT ACCGCAGGTC GTCTGCATGT CGATGAGAGC
ATGATGGATG AGATCAAGGC ACTTCATGCT GCGGTCAATC CAGTAGAGAC TCTGTTTGTT
GTCGACGCTA TGACGGGTCA AGATGCGGCA AATACAGCTA AAGCATTCAA TGAAGCGCTG
CCTTTGACTG GTGTGGTATT GACCAAGGTC GATGGTGATG CACGTGGTGG TGCTGCTTTA
TCTATCCGTC ATATTACCGG TAAGCCGATT AAGTTCTTAG GTGTGGGTGA GAAGACCGAC
GCATTGGAGC CATTCTATCC TGATCGCGTC GCATCACGCA TCTTAGGCAT GGGTGATGTA
CTGTCACTGA TTGAAGAGGT TGAGCGCGGC GTCGATAAAG ACAAGGCGAT GAAGCTGGCT
TCGAAAGTGA AGAAAGGCGG CAGTTTCGAT CTTGAAGATT TCCGTGAACA GCTTCAGCAG
ATGAAGAACA TGGGCGGCAT GATGGGCATG ATTGAAAAGC TTCCTGGTGT TGGTCAATTA
CCGCCAGAAG CATTAGCTCA AGTTCAAAAT GGCAAGATGA CTAACCAGAT GGAAGCGATC
ATCAACTCCA TGACTAAAGG TGAGCGTGCT CGCCCAGATA TCATCAAAGG GTCGCGTAAG
CGCCGTATCG CTCAGGGTTC TGGTACACAA ATTCAGGACG TAAACCGCTT GTTGAAGCAG
TTTACTCAGA TGCAGAAGAT GATGAAAAAG ATGTCGGGTA AAGGCGGCAT GAAAAAGATG
ATGCGTGGCA TGAGCGGTAT GTTGCCACCA GGCATGAAGA TGCCAGGCCG TTAA
 
Protein sequence
MFENLTDRLS RSLKNISGRG RLTEDNVKET LREVRMALLE ADVALPVVRD FVNSVKERAV 
GQEVSKSLSP GQAFIKIVQS ELENAMGEAN EALDLSAQPP AVIMMAGLQG AGKTTSVAKL
SKFLREREKK SVLVVSADVY RPAAIKQLET LATEVEVEFF PSDVSQKPID IVNAAMAHAK
LKFIDVVIVD TAGRLHVDES MMDEIKALHA AVNPVETLFV VDAMTGQDAA NTAKAFNEAL
PLTGVVLTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTD ALEPFYPDRV ASRILGMGDV
LSLIEEVERG VDKDKAMKLA SKVKKGGSFD LEDFREQLQQ MKNMGGMMGM IEKLPGVGQL
PPEALAQVQN GKMTNQMEAI INSMTKGERA RPDIIKGSRK RRIAQGSGTQ IQDVNRLLKQ
FTQMQKMMKK MSGKGGMKKM MRGMSGMLPP GMKMPGR