Gene Swoo_1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1245 
Symbol 
ID6115480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1583300 
End bp1583986 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content47% 
IMG OID641632728 
ProductDNA repair protein RecO 
Protein accessionYP_001759632 
Protein GI170725606 
COG category[L] Replication, recombination and repair 
COG ID[COG1381] Recombinational DNA repair protein (RecF pathway) 
TIGRFAM ID[TIGR00613] DNA repair protein RecO 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.28511e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.23287e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCTGCGTG GATATGTGCT TCATACTCGC CCTTTTACTG ACTCAAGTGT CTTGGTCAAT 
ATGCTTGTCG ATGGTCAGGG CCGCGTTGAT TGTGTGGCTC GCTTAGGCAG TGGTAAAACG
TCTATTAAAA GTATACTTCA GCCATTTCAG CCGCTGATTT TTGAACTCTC TGGCCGTAGC
AACTTAAAGA ATCTGATCCG AGTCGAGTCT GCTAGCCCGG CGGTGCCTAT CAGTGGTGAG
GTGAGTTTTG CGGGGTTTTA TCTTAATGAG CTAATGGTGC GCTGTATCAG TGTTGACCAT
GGCGCTGAGG AGATCTTTTT CGTTTACCAC AAAACCTTAA TGGCAATGGC TGCTGGTTTT
TGTCAGAGCC AGCTTCGCTA TTTTGAGTTG AGTCTGCTTA AAGAGATAGG TTTGATGCCA
ACACTCAATG TGGATATCGC CCAAGATGCG ATAGAGGCGG ATTACTACTA CAGATTGCTG
CCCGATGAGG GATTTGTTAA CGCCTTAGGG CCAAAAACAT CACACTACAG CGGTGAGATG
TTGCTGTCGC TAGAGAGCCA CACACTGCAA GCTGAGCATT TTAAGCAGGC AAAGCATCTG
ATGCGCCTGC TATTGGCTCC CTGCTTAGGC GATAAGCCCC TTAAGTCTCG CGCGCTGTTT
AAAACTAAAT CTCAATATGC AAAATAA
 
Protein sequence
MLRGYVLHTR PFTDSSVLVN MLVDGQGRVD CVARLGSGKT SIKSILQPFQ PLIFELSGRS 
NLKNLIRVES ASPAVPISGE VSFAGFYLNE LMVRCISVDH GAEEIFFVYH KTLMAMAAGF
CQSQLRYFEL SLLKEIGLMP TLNVDIAQDA IEADYYYRLL PDEGFVNALG PKTSHYSGEM
LLSLESHTLQ AEHFKQAKHL MRLLLAPCLG DKPLKSRALF KTKSQYAK