Gene Swoo_1243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1243 
Symbolrnc 
ID6115478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1581525 
End bp1582202 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content46% 
IMG OID641632726 
Productribonuclease III 
Protein accessionYP_001759630 
Protein GI170725604 
COG category[K] Transcription 
COG ID[COG0571] dsRNA-specific ribonuclease 
TIGRFAM ID[TIGR02191] ribonuclease III, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.71922e-08 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.31093e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGAACCGA TTAAGAACAT ACCTAGACTG TGTAGAACCT TAGGTTATGA CTTTAGTGAA 
TTAGCACTGC TTGATCATGC GCTGACACAC CGCAGCGCGG CGAGTAAACA CAATGAAAGG
TTAGAGTTCC TTGGGGATTC TATACTCTCT ATTATTATCT CTGATGCGCT TTATCATCAG
TTTCCTAAAG CGACAGAGGG AGATCTTAGC CGTATGCGAG CCACATTAGT GTGTGGCAAA
ATGCTGGCTG AGATCGGCTT TGAATTTAAG TTAGGCGACT ACTTAAAGCT TGGCCCTGGT
GAGTTGAAAA GCGGCGGCTT CCGCCGTGAG TCAATTATTG CCGACGCCGT AGAGGCGATA
ATTGGTGCAG TCTACTTAGA TTCCGATCTG GAAGTGACTC GCAGCTTAGT GCTTGGCTGG
TACAAGACAC GTCTTGAAAC CATTCAACCT ATAAATCAAA AAGATCCGAA AACCTTGTTG
CAAGAGTTGT TGCAGGGTTA TAAAAAACCG CTCCCTGTCT ATAAAGTGAC AGATATTAGA
GGGGAAGCGC ACGCGCAAAC CTTTACAATA GAGTGTTATG TTGAAGAGTT GCGTAAACCC
GTTGTTGGGG TTGCGAGTTC CCGAAGAAAA GCCGAGCAGC TTGCCGCTGC ACAGGCTTTG
GAGTTAATAA AACGATGA
 
Protein sequence
MEPIKNIPRL CRTLGYDFSE LALLDHALTH RSAASKHNER LEFLGDSILS IIISDALYHQ 
FPKATEGDLS RMRATLVCGK MLAEIGFEFK LGDYLKLGPG ELKSGGFRRE SIIADAVEAI
IGAVYLDSDL EVTRSLVLGW YKTRLETIQP INQKDPKTLL QELLQGYKKP LPVYKVTDIR
GEAHAQTFTI ECYVEELRKP VVGVASSRRK AEQLAAAQAL ELIKR