| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1233 |
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| Symbol | nhaR |
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| ID | 6115468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1572382 |
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| End bp | 1573290 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641632716 |
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| Product | transcriptional activator NhaR |
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| Protein accession | YP_001759620 |
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| Protein GI | 170725594 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.498359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000251035 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTCTCATC TGAACTACAA CCATCTCTAT TATTTTTGGA TGGTCCATAA AAAAGGCTCG
GTGGCGAAAG CTGCCGAGGC TTTATGCTTA GCCCCTCAAA CGGTAACAGG GCAGATCCGT
GTCCTTGAAG CCCGCCTTAA AGGCAGTCTA TTCAAACGTT CTGGACGTTC TCTTGAGCCC
ACTGAGCTTG GTGAGTTAGT GTTCCGTTAC GCTGATAGGA TGTTTAGCCT GAGTTATGAG
ATGCTAGATA TTCTCAATTA CCAAAAAGAT GAGAATATTC TATTTGAAGT CGGCATTGCC
GATGCGCTCT CTAAGGCGCT TGCGAGTCGA GTTCTTCTCT CTGTTGTTCC CAGTGATGGT
TCTATGCATT TGGCCTGCTT TGAGTCGACC CATGAAAGTT TAATGGAGCG GCTGCGCGAG
CATAAACTTG ATATGATCTT ATCTGATTGC GCTGGTGAAT CTTTGAAATA CCCAGAGATC
TTATCCAAGA AACTGGGGGA GTGCGGGGTT GCATTTTTCT CCGCTGAACA GTTCAGTCAA
CCTTTCCCTG AATGTTTAGA ACAGGGCAAG TTGTTGATCC CTGGTAAACG CACCTCTTTA
GGCCAGCAAC TGTACCACTG GTTTGATGTC AACGGACTCA ATGTCAATAT CTTAGGTGAG
TTTGATGACG CGGCTATGAT GAAGGCATTT GGCTACTTTA AGCAGGGGAT CTTCGTTGCT
CCCTCAATCT ATAAGCAAGA TATTTTATCT CATGGTATGC ATCTACTTGG TGAGACTACA
GACATTAAAG AGGTCTACCA TGTGATGTTT GCTGAGAGGA TGATTCAACA TCCAGCGGTG
AAGCGTCTCT TGGCAACCGA TTTTACCGAT CTGTTTGAAG GTCGTGATGC CGAAGTACAG
CGTCTATAA
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| Protein sequence | MSHLNYNHLY YFWMVHKKGS VAKAAEALCL APQTVTGQIR VLEARLKGSL FKRSGRSLEP
TELGELVFRY ADRMFSLSYE MLDILNYQKD ENILFEVGIA DALSKALASR VLLSVVPSDG
SMHLACFEST HESLMERLRE HKLDMILSDC AGESLKYPEI LSKKLGECGV AFFSAEQFSQ
PFPECLEQGK LLIPGKRTSL GQQLYHWFDV NGLNVNILGE FDDAAMMKAF GYFKQGIFVA
PSIYKQDILS HGMHLLGETT DIKEVYHVMF AERMIQHPAV KRLLATDFTD LFEGRDAEVQ
RL
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