| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1228 |
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| Symbol | |
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| ID | 6115463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1566442 |
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| End bp | 1568676 |
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| Gene Length | 2235 bp |
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| Protein Length | 744 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641632712 |
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| Product | phosphoenolpyruvate-protein phosphotransferase PtsP |
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| Protein accession | YP_001759616 |
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| Protein GI | 170725590 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3605] Signal transduction protein containing GAF and PtsI domains |
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| TIGRFAM ID | [TIGR01417] phosphoenolpyruvate-protein phosphotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0147001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0051402 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTAAAAA CACTAAGAGA TATTACACAG GCTGTTGCTG CGGCTCAGGA TCTCCACTCT
GCATTAGCCC TATTGGTGTC TCAAACCAAG TCAGCCATGG CAACCCAGTG TTGCTCTATC
TATATACTAG AGGGGCGAGA GCTTATTCTA TCGGCCACCG ATGGTCTGCT TACTGATGCG
GTTGGTCAGG TGAAGATGTC ATTGAGTGAA GGCCTAGTTG GGCTAGTTGC CGAGCGGGAA
GAGGCTGTTA ACCTTGCTGA TGCCCGTCAA CACCCTAGGT TTAAAGAGTT CTCTGAAGTT
GAGGAGGAGA GCTTTCGCGC ATTTCTTGCA GTCCCTATTA TCTACCAAAA ACGCATTCTA
GGTGTTCTAG TTGTTCAGCA GATCGAAGCT CGGCAGTTTA ATGAGGGTGA AGAGGCATTT
CTGATGACCT TAGCGGCGCA GCTTGCGATG GCTATCAGAA ACCTGAGAAT GAAAGATGAG
GTGAAAACCA GCTCTAACCA ACTGCATTTT ACCGGCACCT CAGCTGCTAA CGGTATCGCC
ATCGCCCATG CTTTAGTACT TGGTGGCCAG ATAGATCTGG AACAGCCAGA GTCAAGAGCT
CAAGATATTA CCTCCGAGGA GGCAAGGTTA CACACGGCGA TTAGTACCTG TAAAGATACG
TTAACCTCTC TGTCGCAGCG ATTTGATCAA GAGCAGGATA ATGAAGTGGT CTCTATCTTC
TCTGCTCTAT TACTTCTGCT TGATCACGCG AGTTTAGGGG GGGAGTACAT TAAAGAGGTC
AGAGATGGCT GGTGTGCGGT TTCAGCTGTC AGTCGAGTTT CTCTGCGTTA CATCGAGCAG
TTTACTCAGA TGCAAGATCT CTACTTGAAG GAGCGGGCCA GTGATATTCG CGATCTAGGT
CAGCGGGTAT TACGTCTCTT GATTGAGCCT GAAAGGATGG AGGTTGATCC TGAGATCCCA
GTGATTTTGG TCACTAAAGA AGCCGATGCC ACCATGTTAG CTGAGTTCCC CAGACAGAAA
CTAGTGGGAA TTGTGACTGA GCAAGGGGGA GTCAACTCCC ATGCGGCTAT TTTAGCTCGA
GCTTTAGGCG TCCCGGCGAT TATCGGTGTC GAGGGAGTGT TGACGGCAGG TATCGATAAT
AAGCTGCTTA TTATCAATGC TAACCGCGGC CAACTCTTAG TCTCTCCTAC TCCTACATTG
ATTAATGAGT ATCGCAACCT TATCTCTGCC GAAAAGGCGC TGCAAAAGCA GTATGCGATG
GAGTTGAACC TGCCTGCAGA GACCATTGAT GGAAAGCGGA TCCATCTTTA TTTAAATGCT
GGCTTGTTAA GCAGTTTAGC TTCCGAGATA GCCGATGGTT CAGACGGGGT TGGCCTGTAT
CGTACTGAGA TCCCTTTTAT GTTGCACCAA AGATTCCCTA GCGAGTCAGA GCAAGTAAAG
GTGTACAAAG AAGTTCTTGA CGCTGCCAGT GATAAGCCGG TGGTGATGCG TACCTTAGAT
GTCGGTGGCG ATAAACCACT CTCCTATTTT CCTATTAATG AAGAAAACCC TTTTCTTGGT
TGGCGAGGTA TTCGTCTTTC TCTTGATCAC CCTGAGCTGT TTCTTGTGCA GCTTAGGGCG
ATGGTCCAAG CTGGGGGCGA AGGGGAGCAG CTGCATATCT TACTGCCAAT GGTGAGCAGT
TTAGATGAGA TAGATCAGGC TAAAGCTTAC TTAGAGCAAG CCTATTTTGA GCTGAAAAAT
GATGTGAACC CTAATATCGT CAGACCAAAA CTTGGGATCA TGCTTGAAGT ACCTGCACTA
CTTTACCAAC TTGCAGAGGT CGCAAAACGG GTAGATTTTG TCTCCGTTGG CTCTAACGAC
TTAACCCAAT ACCTGCTAGC TGTGGATAGA AATAACCCAA GGGTCAGCAC GCTTTATGAT
TGTTATCACC CTGGAATACT TCGTGCTTTA AAGCGGGCAC GTTTTGACTG TTGGCAATAC
CATCTGCCTG TCAGCGTATG TGGTGAACTT GCTGGAGAGC CTATCGGTGT TATTTTATTG
GTTGCCATGG GTTATGATCA GTTAAGTATG AACCAGGGGA GTTTAGCTAA GGTGAACTAC
CTACTTAGAC GAGTGTCTCA TTCTGATCTC AGCGAACTTT TGGAGATGGC ACTGACATTA
AATAATGGCC GTCAAGTAAG GGAGTTGGTG AGAAGCTACT TTGAATCTCG CGAGCTGGGT
GCTCTGCTTA ACTAA
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| Protein sequence | MLKTLRDITQ AVAAAQDLHS ALALLVSQTK SAMATQCCSI YILEGRELIL SATDGLLTDA
VGQVKMSLSE GLVGLVAERE EAVNLADARQ HPRFKEFSEV EEESFRAFLA VPIIYQKRIL
GVLVVQQIEA RQFNEGEEAF LMTLAAQLAM AIRNLRMKDE VKTSSNQLHF TGTSAANGIA
IAHALVLGGQ IDLEQPESRA QDITSEEARL HTAISTCKDT LTSLSQRFDQ EQDNEVVSIF
SALLLLLDHA SLGGEYIKEV RDGWCAVSAV SRVSLRYIEQ FTQMQDLYLK ERASDIRDLG
QRVLRLLIEP ERMEVDPEIP VILVTKEADA TMLAEFPRQK LVGIVTEQGG VNSHAAILAR
ALGVPAIIGV EGVLTAGIDN KLLIINANRG QLLVSPTPTL INEYRNLISA EKALQKQYAM
ELNLPAETID GKRIHLYLNA GLLSSLASEI ADGSDGVGLY RTEIPFMLHQ RFPSESEQVK
VYKEVLDAAS DKPVVMRTLD VGGDKPLSYF PINEENPFLG WRGIRLSLDH PELFLVQLRA
MVQAGGEGEQ LHILLPMVSS LDEIDQAKAY LEQAYFELKN DVNPNIVRPK LGIMLEVPAL
LYQLAEVAKR VDFVSVGSND LTQYLLAVDR NNPRVSTLYD CYHPGILRAL KRARFDCWQY
HLPVSVCGEL AGEPIGVILL VAMGYDQLSM NQGSLAKVNY LLRRVSHSDL SELLEMALTL
NNGRQVRELV RSYFESRELG ALLN
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