| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1178 |
|---|
| Symbol | aspA |
|---|
| ID | 6115413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1509960 |
|---|
| End bp | 1511417 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641632662 |
|---|
| Product | aspartate ammonia-lyase |
|---|
| Protein accession | YP_001759566 |
|---|
| Protein GI | 170725540 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1027] Aspartate ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR00839] aspartate ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000150136 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTAA TGTACGCAAA CCTTAGCGAA GAAACACGTT TAGAAACGGA TCTGCTAGGG
GATAAATCGA TCCCGAAAGA GGCGTTTTAC GGTATTCATA CCCTAAGAGC GATGGAAAAC
TTTAATATCA GCAGTGAAAA GATTGGTGAT TGTCCTGAGT TTGTTCGCGG TATGGTGAAA
ACGAAAAAAG CCGCAGCGTT AGCAAATGGA GAGCTAGGCA CCATATCTCA AGATATCGCA
GCAGCAATTG TTAGAGCTTG TGACACTCTG TTAGCCGGTG AACGATTTTA TGATCAGTTT
CCCATCGATG CATTTCAAGG TGGAGCGGGT ACCTCGGTTA ATATGAACAC CAATGAGGTT
ATTGCCAATA TCGCTTTGAC TCAGATGGGG CACGAGAAGG GGAGTTATCA GCATATTAAC
CCTAACGATC ATGTTAATAA GTCCCAAAGC ACTAATGATG CCTACCCTAC TGGGTTTCGT
GTTGCGCTGT TTGAGCGAAC CGAATCTGTT TTAGCCGCTC TGACTCTCCT TATCGATACC
TTTATGGCTA AGTCGGCAGA GTTTGATGAT GTATTAAAGA TGGGGCGTAC TCAGTTGCAA
GATGCAGTAC CTATGACTCT TGGGCAGGAG TTTCGCGCTT TCGGTGTTAC CTTGAAGGAG
GAGCTGAAAA GCATACAACG TTGTCAGGAG TTACTGCTTG AAGTCAACTT AGGGGCCACG
GCGATTGGTA CTGGGCTTAA TACGCCGCAA GGCTATTCTC AATTAGCCAT CGAAAAACTG
GCTGAGATCA CAGGTCACGC CTTTGTACCC GCAGAGGACT TAGTTGAAGC GACATCGGAT
TGTGGCGCCT ATGTGATGTT ATCGAGCGCC TTAAAGCGTT TTGCCATCAA GCTGTCGAAG
ATATGTAACG ACCTTCGTCT GTTGTCTTCG GGTCCTCGCT GTGGATTTAA TGAGATAAAC
CTGCCTCAAA TGCAGGCGGG CTCATCAATT ATGCCAGCTA AAGTTAATCC GGTTATCCCT
GAGGTGGTCA ATCAGGTGGC ATTTAAAGTA TGTGGTAACG ATTTGACCAT TACGATGGCG
GCTGAAGCGG GTCAGTTACA ACTTAATGTA ATGGAGCCCG TTATTGGTCA GAGTTTGTTT
GAGTCATTGT CGCTGCTGGA AAATGCCTGC TTTACGCTTA AAGATAAGTG CATTAAGGGG
ATCACGGCAA ATCGTCAGAT CTGTCAGGAC TTCGTACTTA ACTCTATCGG TATCATCACC
TATTTAAACC CATTTATTGG TCATCATGAA GGGGATATCG TCGGTAAGAT CTGTGCCGAA
ACGGGCCAAA GCGTGCGAGA GGTGGTGTTA GCGCGAGGAT TGCTATCAGA GGAGCAGCTC
GATGAGATCT TCTCCATTGA GAACCTGATG AATCCTCAAT ATAAAGCTCA GCGGTTTGCG
ACAGCCGTTA AAGGCTAA
|
|---|
| Protein sequence | MTVMYANLSE ETRLETDLLG DKSIPKEAFY GIHTLRAMEN FNISSEKIGD CPEFVRGMVK
TKKAAALANG ELGTISQDIA AAIVRACDTL LAGERFYDQF PIDAFQGGAG TSVNMNTNEV
IANIALTQMG HEKGSYQHIN PNDHVNKSQS TNDAYPTGFR VALFERTESV LAALTLLIDT
FMAKSAEFDD VLKMGRTQLQ DAVPMTLGQE FRAFGVTLKE ELKSIQRCQE LLLEVNLGAT
AIGTGLNTPQ GYSQLAIEKL AEITGHAFVP AEDLVEATSD CGAYVMLSSA LKRFAIKLSK
ICNDLRLLSS GPRCGFNEIN LPQMQAGSSI MPAKVNPVIP EVVNQVAFKV CGNDLTITMA
AEAGQLQLNV MEPVIGQSLF ESLSLLENAC FTLKDKCIKG ITANRQICQD FVLNSIGIIT
YLNPFIGHHE GDIVGKICAE TGQSVREVVL ARGLLSEEQL DEIFSIENLM NPQYKAQRFA
TAVKG
|
|---|
| |