| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1157 |
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| Symbol | |
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| ID | 6115392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1491001 |
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| End bp | 1492014 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641632641 |
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| Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
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| Protein accession | YP_001759545 |
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| Protein GI | 170725519 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
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| TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000544241 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0397381 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGGTTT TAGGTATTGA AACATCTTGC GATGAAACTG GGGTGGCTGT TTATGATGAT
GAGCAGGGCC TGTTGTCACA TACATTGTAC AGTCAGGTAA AGCTGCACGC CGATTACGGC
GGTGTTGTCC CTGAGCTGGC TTCGAGAGAT CACGTTAGAA AAATCGTTCC GCTCGTTAAG
CAGGCGCTTG CTGATGCCAA CTGCACATTA GATGATATCG ATGGCGTGGC TTATACCAAG
GGGCCTGGTT TAGTGGGAGC GCTGCTTGTC GGTGCATGTA TGGGAAGAGC GCTGGCTTAC
TCCTGGGATA AACCCGCGAT TGGCGTACAT CACATGGAGG GGCATCTGCT TGCGCCTATG
CTCGAAGATG ATGTGCCTGC ATTTCCATTT CTTGCACTAC TGGTTTCTGG CGGTCACTCC
ATGTTGGTTG CTGTCGAAGG CATAGGTAAA TATGAAGTCC TCGGCGAGTC GGTTGATGAT
GCGGCAGGTG AAGCGTTTGA TAAAACCGCG AAATTGATGG GGCTAGATTA TCCAGGCGGA
CCACGTTTGG CTAAGTTAGC TGCAAAAGGC GAAAGCGGCC ATTACCGCTT CCCACGTCCT
ATGACAGATA AACCTGGGTT GAACTTCAGC TTCTCTGGAT TAAAAACCTT TGCGGCCAAT
ACCATTGCTG CTGAGTCAGA TGATGAGCAG ACCCGTGCCA ATATCGCTTT AGCCTTTGAA
GAAGCTGTGG TCGATACCTT GTCGATTAAG TGTCGACGTG CATTAAAGCA GACCGGTTAT
AAAAACTTAG TGATTGCTGG CGGCGTGAGT GCTAATACTC GTTTGCGTAG CTCATTGGCT
GAGATGATGA CCTCTCTTGG CGGTAAGGTT TATTACCCTA GAGGTGAGTT CTGTACCGAT
AATGGCGCGA TGATCGCTTA CGCAGGTTTA CAAAGGTTAA AGGCGGGTCA AACTGATGAT
CTTGGCGTAA AGGGGATACC GCGCTGGCCA TTGGATACAC TGCCACCGGT GTAA
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| Protein sequence | MRVLGIETSC DETGVAVYDD EQGLLSHTLY SQVKLHADYG GVVPELASRD HVRKIVPLVK
QALADANCTL DDIDGVAYTK GPGLVGALLV GACMGRALAY SWDKPAIGVH HMEGHLLAPM
LEDDVPAFPF LALLVSGGHS MLVAVEGIGK YEVLGESVDD AAGEAFDKTA KLMGLDYPGG
PRLAKLAAKG ESGHYRFPRP MTDKPGLNFS FSGLKTFAAN TIAAESDDEQ TRANIALAFE
EAVVDTLSIK CRRALKQTGY KNLVIAGGVS ANTRLRSSLA EMMTSLGGKV YYPRGEFCTD
NGAMIAYAGL QRLKAGQTDD LGVKGIPRWP LDTLPPV
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