Gene Swoo_1153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1153 
Symbol 
ID6115388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1486161 
End bp1487996 
Gene Length1836 bp 
Protein Length611 aa 
Translation table11 
GC content46% 
IMG OID641632637 
ProductRNA polymerase, sigma 70 subunit, RpoD 
Protein accessionYP_001759541 
Protein GI170725515 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.83168e-06 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0896301 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCAAA CTCCTCAGTC GCAACTTAAA TTGTTGCTTG CCAAAGGTAA AGAGCAAGGT 
TACTTAACCT ATGCAGAAGT GAACGATCAC TTGCCTGCAG ATATGGTCGA TGCTGATCAG
ATCGAAGATA TTGTCCAGAT GATCAACGAC ATGGGTATTC GCGTCTATGA ACAGGCGCCG
GATGCTGATG AGATGATGAT GTCTGAAGAC AGCACCGATG ATGATGCTGC TGAAGAAGCT
GCTGCTGCAC TTGCAACAGT AGAGGCCGAG CTAGGCCGTA CAACTGACCC AGTTCGTATG
TATATGCGTG AGATGGGTAC TGTTGAACTT CTTACCCGTG AAGGCGAGAT TGTTATCGCT
AAGCGTATTG AAGAGGGGAT CAACACAGTT CAGGCATCGG TTGCTGAATA CCCACAAGCG
ATCGCGATGA TCCTTGAGCA GTATGACCGC TACGAAGCTG AAGAGATCCG CCTATCGGAC
ATTATCTCAG GTTTTGTTGA CCCAAATGCT GAAGATGTTG CGCCAACAGC TACCCACGTC
GGTTCAGAAC TTTCAGATGA AGATCTGGAC GATGAAGATG ATGAAGATAG CGAAGATGAT
GAAGATGAAG AGGAAGGCCC AAAAGGTCCA GATCCTGAAG AAGCGAAAGA GCGCTTTACT
CAACTTCGTG AAGCTCATGA GAACACACTT AGAGTTATCA ACCTAAAAGG CCGTGGACAC
CCAGAGTCTA CCTTAGCTCT TTTTGAGATC GGTGAGATTT TCAAAGAGTT CCGCTTAATG
CCTAAGCAGT TTGACCGCTT AGTGAAAAGC ATGCGCGCCA TGATGGACAG AGTGCGTGTT
CAAGAACGCC TCATCATGAA GCTGTGTGTT GAACAAGCTA AGATGCCGAA GAAAAACTTC
GTTAAAGGTT ATACCTCTGA CGAAAGCAGC ATCGCATGGT TTGATGAAGA ACTTGCATCG
AAAAAGCCTT ATGTTGAAGG TTTAGAGATG GTTGAGCCTG ATGTTCGACG TTGTCGTGCA
AAGCTTGATG CGATAGAAAA AGAGACTGGA CTTGCGATTG CGGCTATCAA AGATATCAAC
CGTCGTATGT CAATCGGTGA AGCTAAAGCT CGCCGTGCTA AGAAAGAGAT GGTTGAAGCT
AACTTACGTC TAGTTATCTC AATCGCCAAA AAGTACACCA ACCGTGGCCT ACAGTTCTTG
GATCTTATCC AGGAAGGTAA CATTGGTCTA ATGAAAGCGG TTGATAAGTT TGAATACCGT
CGTGGTTACA AGTTCTCGAC CTATGCAACT TGGTGGATCC GTCAGGCGAT CACTCGCTCA
ATTGCTGACC AAGCAAGAAC GATCCGTATT CCAGTGCACA TGATTGAGAC AATCAACAAG
CTAAACCGTA TCTCTCGTCA AATGCTACAA GAGATGGGTC GTGAGCCCTC TCCTGAAGAG
TTGGCAGAAC GCATGTTGAT GCCTGAAGAT AAGATCCGTA AGGTCCTTAA GATTGCTAAA
GAGCCAATCT CAATGGAAAC CCCTATCGGT GATGATGAAG ATTCGCACTT AGGTGATTTC
ATCGAAGATA CTACGCTTGA GCTACCTTTA GACTCAGCAA CAGGCGAAAG CTTGAAGAAC
GCTACTCACG AAGTCTTAGC AGGCCTAACG GCTCGTGAAG CTAAAGTACT GCGTATGCGT
TTTGGTATCG ACATGAACAC TGACCACACG CTTGAAGAGG TAGGTAAGCA GTTTGACGTA
ACACGTGAGC GTATTCGTCA GATTGAAGCT AAGGCGCTGC GTAAGCTACG TCACCCTTCT
CGCTCAGAGA TCTTAAAATC TTTCCTAGAC GAGTAG
 
Protein sequence
MEQTPQSQLK LLLAKGKEQG YLTYAEVNDH LPADMVDADQ IEDIVQMIND MGIRVYEQAP 
DADEMMMSED STDDDAAEEA AAALATVEAE LGRTTDPVRM YMREMGTVEL LTREGEIVIA
KRIEEGINTV QASVAEYPQA IAMILEQYDR YEAEEIRLSD IISGFVDPNA EDVAPTATHV
GSELSDEDLD DEDDEDSEDD EDEEEGPKGP DPEEAKERFT QLREAHENTL RVINLKGRGH
PESTLALFEI GEIFKEFRLM PKQFDRLVKS MRAMMDRVRV QERLIMKLCV EQAKMPKKNF
VKGYTSDESS IAWFDEELAS KKPYVEGLEM VEPDVRRCRA KLDAIEKETG LAIAAIKDIN
RRMSIGEAKA RRAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL MKAVDKFEYR
RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK LNRISRQMLQ EMGREPSPEE
LAERMLMPED KIRKVLKIAK EPISMETPIG DDEDSHLGDF IEDTTLELPL DSATGESLKN
ATHEVLAGLT AREAKVLRMR FGIDMNTDHT LEEVGKQFDV TRERIRQIEA KALRKLRHPS
RSEILKSFLD E