| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1148 |
|---|
| Symbol | |
|---|
| ID | 6115382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1477470 |
|---|
| End bp | 1478756 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641632631 |
|---|
| Product | glucose/galactose transporter |
|---|
| Protein accession | YP_001759536 |
|---|
| Protein GI | 170725510 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0738] Fucose permease |
|---|
| TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0931456 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.671302 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGTA CATCAGTATT AAATGAGCAA TCACAGAGTG CGCACCAAAG TGGGGACTTT
CGCTTTGCTT TAGTGGCGCT AACCTCACTC TTTTTTATGT GGGGTTTTAT CACTTGTCTC
AATGATATTC TTATCCCTTA CCTGAAAAAC ATGTTTGATC TTAACTACAC CCAAGCGATG
TTGGTTCAGT TCTGCTTTTT CGGGGCTTAC TTTATCGTCT CTATTCCTGC GGGAAGTTTA
GTGGGAAAAA TTGGCTATCA GAAGGGGATT GTCACTGGAC TTGCCATTGC ATGTTTGGGG
TGCTTACTCT TCTATCCATC GGCAAGTTTC GCCTCCTACT GGATGTTTCT TGTGGCTTTT
TTTGTGTTGG CTTCGGGCAT CACTATACTG CAAGTTGCCG CTAATCCTTA CGTGAGTGTA
CTTGGCCCTG CCAACACTGC TTCGTCTCGA TTGACTCTGA CTCAGGCTTT TAATTCATTG
GGGACGACAG TTGCGCCATT TTTTGGTAGC TGGTTAATTT TATCGACCTC AGAGCATGGG
GGCACAAACT CTGAAGTATT GAATGATGCC GCTTACCAGG CAAGTACGGT ACAGGTGCCG
TATCTGATCT TAGCGGGTAC ATTAATCTTG ATAGCGGCAC TCTTTTTACG TTTAAAATTG
CCACTTTTGG GGATGAAGAA AAGCTCATCA TTGCCTGAAA AGCCAGGTGT TCATAGTATC
AGTGCTTGGC ATTATCCTCA TTTAGTTCTT GGCGCCGTGG GCATTTTTGT CTATGTGGGA
GCTGAGGTGT CAATCGGTAG TTTTCTGATC AGCTTTTTAG GTCAGGAGGA GATTGCCGGG
CTTAGCCATG CAGAAGCTGC AAACTATATT GCTTACTATT TTGGTGGCGC TATGGTGGGA
CGCTTTTTGG GTGCGGCGGT CATGCAGAAG ATTAAAGCTG GTAAGGTGCT GGCATTCAAT
GCGGTATTAG CCTGTGTGTT GATTGTGTTT GCAATCTTTA GCACTGGGAG TCTTGCCATG
TGGGCACTGC TTCTCGTGGG TTTGTGTAAC TCAATCATGT TTCCTACAAT TTTTAGTTTA
GCGCTGCAAG ATCTTGGGCA ATTCACCAGT CAGGGATCGG GTATCTTATG TTTAGCGATA
GTCGGTGGTG CCATTATTCC TCTGCTTCAA GGAGGCTTAG CTGATATTTT TGGTATTCAA
TTAGCTTTTG CTTTACCACT GCTTTGCTAC GGGTTTATTG CTTATTACGG CATGAAAGGC
TGTGATGCAA AACGGCCATT ACACTAG
|
|---|
| Protein sequence | MASTSVLNEQ SQSAHQSGDF RFALVALTSL FFMWGFITCL NDILIPYLKN MFDLNYTQAM
LVQFCFFGAY FIVSIPAGSL VGKIGYQKGI VTGLAIACLG CLLFYPSASF ASYWMFLVAF
FVLASGITIL QVAANPYVSV LGPANTASSR LTLTQAFNSL GTTVAPFFGS WLILSTSEHG
GTNSEVLNDA AYQASTVQVP YLILAGTLIL IAALFLRLKL PLLGMKKSSS LPEKPGVHSI
SAWHYPHLVL GAVGIFVYVG AEVSIGSFLI SFLGQEEIAG LSHAEAANYI AYYFGGAMVG
RFLGAAVMQK IKAGKVLAFN AVLACVLIVF AIFSTGSLAM WALLLVGLCN SIMFPTIFSL
ALQDLGQFTS QGSGILCLAI VGGAIIPLLQ GGLADIFGIQ LAFALPLLCY GFIAYYGMKG
CDAKRPLH
|
|---|
| |