| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1131 |
|---|
| Symbol | |
|---|
| ID | 6115365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1453842 |
|---|
| End bp | 1454942 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641632614 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001759519 |
|---|
| Protein GI | 170725493 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTT TTAAGAAAAT AACCACGTTA GCCTTAATCG GTGCAGGTGT GTTAGCAAGC
ACTAACGTGA TGGCTGAAGA GGTAGTTAGG GTCTATAACT GGTCCGATTA TATTGCCGAA
GATACTTTAG CTAACTTTGA AAAAGAGACA GGTATTCGTG TTATCTATGA TGTGTTTGAT
AGCAATGAGG TGGTTGAAGC TAAGCTGCTA TCGGGTCGTT CTGGTTATGA TCTTGTGGTG
CCATCGAACA ACTTCCTCGC TAAGCAGATA AAAGCAGGGG CTTTTCAAAA GCTAGATGTT
GCTCAACTCT CTAATCATAA GAATCTTAAA GCTGACTTGA TGAAGCAGCT GGAAGCGGCA
GATCCGGGTA ATGAGTATTC AGTGCCTTAT CTGTGGGGAA CGACTGGTAT AGGCTATAAC
GAAGGTAAGG TGAAAGAGAT TTTAGGTGAA GATGCACCGA CTGATTCTCT TGAGCTGCTG
TTTAATCCTA AATATGCTGA AAAGCTCTCA AAGTGTGGTC TCTCAATGCT AGATTCTGCC
GATGAGATGC TGCCTATGGC CTTAGTTTAC TTAGGGTTAG ATCCCAATAG TAATAGCAAG
GCTGATTACA AGAAAGCGGG TGAAGTGTTA GACAAGGTGC GTCCTTTTGT CACTTACTTC
CACTCATCAC GCTACATCAC TGACCTCGCT AATGGTGATA TCTGTGTTGC CTTTGGTTAC
TCAGGTGATG TGTTCCAAGC AGCGGCTCGT GCCGAAGAAG CTGAAAATGG TCAGGTGATT
GGCTACTCAA TTCCTAAAGA GGGTGCGAAC CTTTGGTTCG ATATGTTGGC GATACCTGCT
GATGCTGCCA ATGTGAAAAA TGCCCACACC TTTATTAACT ACATACTTCG CCCTGAGGTG
ATCGCACCTA TTACCGATTA CGTTGCTTAC GCGAATCCAA ATGCGGCGGC AGAAACCTTA
GTAGATAAAG AGATCTTAAG CGACCCAGCT ATCTATCCAA CGCCTGAAGT ACTAAAGCGC
CTCTATGTGG CCGATGTTCG TCCGATGAAG GCTCAACGTG CGATGACACG TGTTTGGACC
AAAGTTAAGT CAGGTTACTA A
|
|---|
| Protein sequence | MKFFKKITTL ALIGAGVLAS TNVMAEEVVR VYNWSDYIAE DTLANFEKET GIRVIYDVFD
SNEVVEAKLL SGRSGYDLVV PSNNFLAKQI KAGAFQKLDV AQLSNHKNLK ADLMKQLEAA
DPGNEYSVPY LWGTTGIGYN EGKVKEILGE DAPTDSLELL FNPKYAEKLS KCGLSMLDSA
DEMLPMALVY LGLDPNSNSK ADYKKAGEVL DKVRPFVTYF HSSRYITDLA NGDICVAFGY
SGDVFQAAAR AEEAENGQVI GYSIPKEGAN LWFDMLAIPA DAANVKNAHT FINYILRPEV
IAPITDYVAY ANPNAAAETL VDKEILSDPA IYPTPEVLKR LYVADVRPMK AQRAMTRVWT
KVKSGY
|
|---|
| |