| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1058 |
|---|
| Symbol | |
|---|
| ID | 6115292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1373583 |
|---|
| End bp | 1374731 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641632541 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001759446 |
|---|
| Protein GI | 170725420 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTTA GCCCTAAGAA AGATAGCGGT AATAATCATG TTGTCACGCA AAAAAGCGTG
GCTCAGGTTC AGTCTGATAG CTCAAGCATC GTCGATACTC GTTACTGGCA TGCTCTGGAT
GATGGACGGA TTCAATGCGA TCTTTGCCCT CGTCATTGCC AGCTCAGAGA GGGTAAACGT
GGTGTCTGTT TTATACGGCA GAATATCGAC AGTGAGATAA AGCTCACCAG TTATGGTCGC
TCTAGTGGTT TCTGCGTCGA CCCCATCGAG AAGAAGCCCC TTAACCACTT CTACCCTGGC
AGCTCTGTGC TCTCTTTTGG TACTGCTGGA TGTAACTTGT GTTGTAAGTT TTGCCAAAAC
TGGGATATTA GTAAGTCACG CCACTTTGAT ACATTAGGCT CGCAAGCATC TCCTGAATTA
CTGGCCGCTA CGGCTAAAAA AATGGGCTGT AAAAGTGTGG CGTTTACCTA TAACGATCCA
GTCATCTTTC ATGAGTATGC TATCGATGTA GCCCAAGCTT GCCATGAGAT AGGTATTAAC
TCAGTTGCGG TTACGGCCGG ATATATCTGC CCCGATCCCA GAGTTGAGTT TTTTAACTTT
ATGGATGCAG CCAATGTTGA CCTTAAGGGG TTTACACAAG AGTTTTATCA TAAGATCTGT
AGTGGCAATC TCAGTGATGT GCTCGACACC TTGCTTTACC TTAAGCATGA AACTCAGGTC
TGGTTTGAGA TAACCACTTT GCTTATTCCC GATGAAAATG ACAGTGTTAG AGAACTAGAG
CAGCAAACTC AGTGGATTGT GGACAATCTA GGGCCCAATG TACCACTGCA TTTCAGTGCT
TTTCATCCAG ACTTTCATAT GTTGAAAAAA ACCAGAACCC CTGTATCGAC ATTGATGCGC
GCCAGAGAGA TTGCACTAAA GCAGGGGCTT AATTATGTCT ATACCGGTAA TGTGCATGAC
AGCGCTGGTG GCAGCAGTTA TTGTCCAAGT TGTCATCAAC GGGTCATTGA ACGGGATTGG
TATAAGTTAG GGGAGTACTG TTTAGATAGC GCTGGCCATT GTCATCATTG TGGTGAGTCC
ATTTCGGGAC GTTTCGATGG GGCACCGGGC CACTTTGGTC ATAGAAGGAT CCCGATTAGA
ATTGGCTAA
|
|---|
| Protein sequence | MKFSPKKDSG NNHVVTQKSV AQVQSDSSSI VDTRYWHALD DGRIQCDLCP RHCQLREGKR
GVCFIRQNID SEIKLTSYGR SSGFCVDPIE KKPLNHFYPG SSVLSFGTAG CNLCCKFCQN
WDISKSRHFD TLGSQASPEL LAATAKKMGC KSVAFTYNDP VIFHEYAIDV AQACHEIGIN
SVAVTAGYIC PDPRVEFFNF MDAANVDLKG FTQEFYHKIC SGNLSDVLDT LLYLKHETQV
WFEITTLLIP DENDSVRELE QQTQWIVDNL GPNVPLHFSA FHPDFHMLKK TRTPVSTLMR
AREIALKQGL NYVYTGNVHD SAGGSSYCPS CHQRVIERDW YKLGEYCLDS AGHCHHCGES
ISGRFDGAPG HFGHRRIPIR IG
|
|---|
| |