Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1055 |
Symbol | |
ID | 6115289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1370158 |
End bp | 1371954 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641632538 |
Product | diguanylate cyclase |
Protein accession | YP_001759443 |
Protein GI | 170725417 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCACAG ATTTAAAGAT CACCCATAAA TTTCCTGTTG TTATGATCTG TTTTGCGCTG CTTTCAGCAT TAATCACAGC CTTTATCGCC TTTACCATCG CCAAGAATGA GATGACTAAC TCGGCAGAAG ACAAACTGAG CTCGCTGTTA GAGTCTAGAG CCTCATCGCT AAATACCTAC TTCTCTGTTA TCGAAAAAGA CCTCTACTTC CACGCTCAAA GTCCCCTTGT TATCTCAGCT ATCAAAGAGT TTTCTCAAGC TTGGCTTGCC ATGGAGAGCG AGCAAACGAG GCAACTTCAA GATACCTATA TTCACATGAA CCCCTTCTCG AATGAACAGA AAAGCGCACT GCACCGAGCC GATAACGCTT CGCTCTATGA CAAGTACCAT AGCGAGTATC ACCCAGCATT TAGAAACCTA GTTTCAACTC GGGAGTTTCA CGATCTCTTT CTGTTTAATA CCCAAGGAGA TCTTATCTAT AGTGTCAAAA AAGAGGAGGA CTTTGCGACC AACCTACTGA CAGGTCCTTG GCGGGAAACT CACTTAAGTC ACTTAATCAA GGAGCTCAAC GCACAACCAA AGATAAGTCA GCACCTTTTT GCAGATTTTT CCCCTTATGA ACCAAGTCAT CAAGCTCCAG CCAGCTTTAT CGCATCACCG GTATTTGATA GTAACCGCCG CTATATCGGC ATCATCGCAT TTCAGATGCC CCTCGCCCCA CTGAACCGAG TCATGCAGGT AACTGCTGGT ATGGGAGAGA GCGGTGAGAC CTATCTTGTG GGCCCAGATC TCTTGATGCG CAGCGACTCT CGCTTCTTTC AAGGCCGAAG TATACTCCAA ACTCAGGTCG ACACCCCCTC GGTTCATCGT GCCCTTGCCG GAGAGTCCGG CAGTGCTCGA ATAGAGGATT ACCGTGGTAT CTCTGTATTT TCAGCGTTTG CACCTGTCGA CTTTCTGGGA ACCAGATGGG CCATTGTCGC CGAGATAGAC ACTAATGAGA TCTTATCTCC TGTCTATACC ATGAGCCACT TTCTTATCTT AAGTGGCGTC ATTATTGCCA TCGTTATCTT CTTTCTCGGT TATCTGTTGG CGGCCGACAT CTCACTGCCT ATCGTCGCCA TGACACATAT GATGACCCGC CTGTCTCGTA ATGAGCTCAA TATCAATATC TCAGTCTCCG AGCGCAAAGA TGAAGTGGGT AAGATGGCCA AAGCGATGGA AGTGTTTAAA AACAATGCTA TAGAGCGAGA TCAACTTCAG AAAAAGCTCA ACCATATGGC CCACCATGAC ACCTTAACGG GTCTACCAAC CCGCGAGTAT GCAGGTCAAC AGATGAAGGA GTACTTAAAA GCAGGACTTA AGAAAGGCAA CAAGCTGGTG GTGATGTTTG CCGATCTAGA TAACTTCAAG AGCATCAATG ACACCTTAGG TCATCAAGCT GGAGATCAAC TCTTAAAGGA GGTCGCAGTA AGGCTCTCCG AGGCAGTAAG GGAGGATGAC ATTATAGCCA GAGTCGGCGG AGATGAGTTT GTCATCATAC TCCCCTATGT TAACGATCTC AGTGTCATCG AGCATATCGC AAACAAGATG ATCGACTCGC TAGCCATTAA CTTCTTACTT CAGGAGCAGT TCTGCCAAAT TGGCCTCAGC TTAGGTATAG CTGTTGCCCC TGATGACGGG CTTGACGGCA CAGCTTTGAT TAATAAAGCT GATAAGGCTA TGTATCAAGC AAAACAGAGA GGAAAGAATA ACTTCGTCTT CGCCAGTGAG CTTAAAGACC AGTGTCAAAC AGGCTAA
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Protein sequence | MFTDLKITHK FPVVMICFAL LSALITAFIA FTIAKNEMTN SAEDKLSSLL ESRASSLNTY FSVIEKDLYF HAQSPLVISA IKEFSQAWLA MESEQTRQLQ DTYIHMNPFS NEQKSALHRA DNASLYDKYH SEYHPAFRNL VSTREFHDLF LFNTQGDLIY SVKKEEDFAT NLLTGPWRET HLSHLIKELN AQPKISQHLF ADFSPYEPSH QAPASFIASP VFDSNRRYIG IIAFQMPLAP LNRVMQVTAG MGESGETYLV GPDLLMRSDS RFFQGRSILQ TQVDTPSVHR ALAGESGSAR IEDYRGISVF SAFAPVDFLG TRWAIVAEID TNEILSPVYT MSHFLILSGV IIAIVIFFLG YLLAADISLP IVAMTHMMTR LSRNELNINI SVSERKDEVG KMAKAMEVFK NNAIERDQLQ KKLNHMAHHD TLTGLPTREY AGQQMKEYLK AGLKKGNKLV VMFADLDNFK SINDTLGHQA GDQLLKEVAV RLSEAVREDD IIARVGGDEF VIILPYVNDL SVIEHIANKM IDSLAINFLL QEQFCQIGLS LGIAVAPDDG LDGTALINKA DKAMYQAKQR GKNNFVFASE LKDQCQTG
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