Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1030 |
Symbol | |
ID | 6115264 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1341081 |
End bp | 1341794 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641632513 |
Product | two component transcriptional regulator |
Protein accession | YP_001759418 |
Protein GI | 170725392 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000542446 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.656047 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGACC CTCAATCGAC CCATAGAGTC TTACTGGTAG AGGACGATAT TCGCCTTGCC AACTTGATTG TGGATTATTT AAAGTCCCAT GGAATGCACG TTGAAGTTGA GCGTCGCGGT GACACAGTGC TAACTCGCCT GATTAACTAT AAACCAGATA TTATACTGCT GGATATTATG CTACCAGGAA TGGATGGACT CACATTATGT GAGAAATTAC CCGACTACTT TGCCGGCCCC ATCTTATTGA TGAGTGCATT AGGTTCAAAC GAAGATCAGA TCAAAGGTTT AGAGCTAGGT GCCGACGACT ATGTCGTTAA ACCTGTCGAT CCCGCTCTGC TTATCGCCAG AATTAATAAC CTTTTACGCC GTACTGCTAA GCCGCCGAAA GTTGAATCTC ACTGCTTGTC ATTCGGTAAG CTGAGCATAG ACCCTCACAC TCAGGCTATT AGACTTGGCG ACCTTGAAGT GGATCTAACC AGTCATGAGT TTGAACTACT TTGGCTATTG GCATCTCAAG CAGGACAGGT ATTAAGCAGG CAATATATCT ACCAATATCT GTTGAATATC GACTTCGATG GTAAAGACAG AAAGATAGAT GTCAGAGTCT CAAGACTAAG AAAGAAGCTG GGCGACAACA TAGAAACCCC GTTCAGAATT AAAACTGTTT GGGGCCAAGG TTACCTATTT GCACCAGAAG CTTGGACAAC CTAA
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Protein sequence | MTDPQSTHRV LLVEDDIRLA NLIVDYLKSH GMHVEVERRG DTVLTRLINY KPDIILLDIM LPGMDGLTLC EKLPDYFAGP ILLMSALGSN EDQIKGLELG ADDYVVKPVD PALLIARINN LLRRTAKPPK VESHCLSFGK LSIDPHTQAI RLGDLEVDLT SHEFELLWLL ASQAGQVLSR QYIYQYLLNI DFDGKDRKID VRVSRLRKKL GDNIETPFRI KTVWGQGYLF APEAWTT
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