Gene Swoo_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1000 
Symbol 
ID6115234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1311730 
End bp1312665 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content44% 
IMG OID641632483 
ProductDyp-type peroxidase family protein 
Protein accessionYP_001759388 
Protein GI170725362 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG2837] Predicted iron-dependent peroxidase 
TIGRFAM ID[TIGR01413] Dyp-type peroxidase family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.212693 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00012242 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATAACC AGGTTATGCC TCGTGAACAG TTGGGTGTTT GTGCTGAAGG TAATTTGCAC 
AGCGTGTATT TGATGTTTAA TGCTAATGAT GGCGTCGAAT CTCAGTTACG ACCTTGTTTA
GCTAACGTAG CTCAGTATGT CTATGAGCTT AGTGATCAAT ATGCTGATAG CGCATTCAAT
GGCTTTGTTG CTATCGGTGC TAACTATTGG GATAGCTTAT ATCCATCAGC CCGCCCAGCG
CAGTTGAAGC CGTTTCCTGC GATGAATGCA GATAATCGTG ATGCGCCAGC ACTTGAGTAT
GATCTTTTTG TGCATATTCG TTGTGACCGT TTCGATATTC TACACCTGGT TGCTAATGAA
GTGTGCCAAA TGCTTGAGGG GCTCGTTGAG CTTGTTGATG AAGAGCGTGG CTTCCGCTTC
ATGGATAATC GCGATCTCAC AGGTTTTGTC GATGGCACTG AAAATCCGAA AGGGCGTAAT
CGCCAAGAGG TTGCATTAGT AGGTAGTGAA GATGAGGCTT TCAAAGCTGG CAGTTATATT
CATGTACAGA AATATGCACA TAATTTAAGT AAGTGGCATA GGCTCCCGCA AAAGAAGCAG
GAGGATATCA TTGGCCGTAC AAAGCAGGAC AATATTGAGT ACGCATCTGC CGACAAACCG
TTAACAAGCC ACATTAAGCG AGTTAATCTC AAAGACGAGC AGGGTAATTC GATGGAGATC
TTGAGACAAA GTATGCCTTA TGGTTCGGTT AAAGAGCAGG GGCTTATGTT TATCTCAAAC
TGTGGGAACT CAGTTAACTT TGAAAAGATG CTTGAAAGTA TGGTTCAGGG AGATGGGCAT
GGGCACCATG ATCACTTACT TCACTTTACC CAAGCATTAA CAGGTTCCTC TTTCTTTGCT
CCTTCACTGG ATTTTATGGA AAAAGCTGCG GATTAA
 
Protein sequence
MDNQVMPREQ LGVCAEGNLH SVYLMFNAND GVESQLRPCL ANVAQYVYEL SDQYADSAFN 
GFVAIGANYW DSLYPSARPA QLKPFPAMNA DNRDAPALEY DLFVHIRCDR FDILHLVANE
VCQMLEGLVE LVDEERGFRF MDNRDLTGFV DGTENPKGRN RQEVALVGSE DEAFKAGSYI
HVQKYAHNLS KWHRLPQKKQ EDIIGRTKQD NIEYASADKP LTSHIKRVNL KDEQGNSMEI
LRQSMPYGSV KEQGLMFISN CGNSVNFEKM LESMVQGDGH GHHDHLLHFT QALTGSSFFA
PSLDFMEKAA D